Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Pseudomonas fluorescens FW300-N1B4

Subject, 327 a.a., RNA polymerase sigma-38 factor (RefSeq) from Shewanella amazonensis SB2B

 Score =  398 bits (1023), Expect = e-116
 Identities = 216/321 (67%), Positives = 246/321 (76%), Gaps = 5/321 (1%)

Query: 15  EVLLMETGIATDSMSNDEGDAPPSVRAKSKHSASLKQHKYIDYTRALDATQLYLNEIGFS 74
           E L+  +G   D+ +N +G+    V+        L+Q    D  R LDATQLYL+EIGFS
Sbjct: 11  EKLVDFSGKEADTDTNMDGEEVSLVQ-----DLELEQQVQDDLQRNLDATQLYLSEIGFS 65

Query: 75  PLLSPEEEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLI 134
           PLL+ EEEV+++R +  G    R RMIESNLRLVVKIARRY NRGL+LLDLIEEGNLGLI
Sbjct: 66  PLLTAEEEVYYSRKALRGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLI 125

Query: 135 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQK 194
           RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLR AREL  K
Sbjct: 126 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAHK 185

Query: 195 LDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPCE 254
           LDHEP+ EEIA  L  P  EV RML LNE+++SVDV LG D+DK LLD L DD    P  
Sbjct: 186 LDHEPTAEEIAAKLNLPSVEVSRMLKLNEKITSVDVPLGGDNDKALLDVLPDDDSVGPDY 245

Query: 255 LLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVE 314
            +QD+D+S S+  WL+EL  KQREV+ RRFGL G+E STLEDVG EIGLTRERVRQIQVE
Sbjct: 246 KVQDEDISNSVVNWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVE 305

Query: 315 GLKRLREILEKNGLSSESLFQ 335
            LKRLR+IL   GLS E+LF+
Sbjct: 306 ALKRLRDILSAQGLSVEALFR 326