Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Pseudomonas fluorescens FW300-N1B4

Subject, 620 a.a., RNA polymerase sigma-70 factor (RefSeq) from Shewanella amazonensis SB2B

 Score =  205 bits (522), Expect = 2e-57
 Identities = 96/224 (42%), Positives = 155/224 (69%)

Query: 97  RKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 156
           +K M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWI
Sbjct: 383 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 442

Query: 157 RQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVK 216
           RQ I R+I +Q RTIR+P+H+++ +N   R +R++ Q++  EPSPEE+A  +  P  +++
Sbjct: 443 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMAMPEDKIR 502

Query: 217 RMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQ 276
           ++L + +   S++  +G D D  L D + D     P +    + L Q+  + L+ LT ++
Sbjct: 503 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKQATHEVLAGLTARE 562

Query: 277 REVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLR 320
            +V+  RFG+  +   TLE+VG +  +TRER+RQI+ + L++LR
Sbjct: 563 AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 606



 Score = 25.0 bits (53), Expect = 0.005
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 59  RALDATQLYLNEIGFSPLLSPEEEVHFARLSQSG 92
           R  D  ++Y+ E+G   LL+ E E+  A+  + G
Sbjct: 96  RTTDPVRMYMREMGTVELLTREGEIVIAKRIEEG 129