Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Pseudomonas fluorescens FW300-N1B4

Subject, 662 a.a., RNA polymerase sigma factor RpoD from Phaeobacter inhibens DSM 17395

 Score =  205 bits (521), Expect = 3e-57
 Identities = 92/224 (41%), Positives = 156/224 (69%)

Query: 97  RKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 156
           +K M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWI
Sbjct: 425 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 484

Query: 157 RQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVK 216
           RQ I R+I +Q RTIR+P+H+++ +N  +R  R++  ++  EP+PEE+A  L+ P+ +V+
Sbjct: 485 RQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVR 544

Query: 217 RMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQ 276
           +++ + +   S++  +G + D  L D + D     P +    ++L ++  + L+ LT ++
Sbjct: 545 KVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPRE 604

Query: 277 REVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLR 320
             V+  RFG+  +   TLE+VG +  +TRER+RQI+ + L++L+
Sbjct: 605 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 648



 Score = 28.1 bits (61), Expect = 7e-04
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 20/123 (16%)

Query: 215 VKRMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTD 274
           + ++ G+N RV S+D S+   +D+  ++        +  E  +  +L  +   WLS++ D
Sbjct: 319 IDQLYGINRRVMSIDSSMVKLADQARINR------REFVEAYRGRELDPN---WLSDMGD 369

Query: 275 KQR---EVVIRRF-----GLRGHESSTLEDVGLEIGLTRERVRQIQ---VEGLKRLREIL 323
           K     ++ + R       LR   +   + VGL+I   R  V+Q+Q    E  +  +E++
Sbjct: 370 KPGRGWQMFVERSTDKIEELRADMAQVGQYVGLDISEFRRIVQQVQKGEKEARQAKKEMV 429

Query: 324 EKN 326
           E N
Sbjct: 430 EAN 432



 Score = 26.9 bits (58), Expect = 0.001
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 59  RALDATQLYLNEIGFSPLLSPEEEVHFARLSQSGDPAGRKRMI 101
           R  D  ++YL E+G   LLS E E+  A+  +    AGR  MI
Sbjct: 111 RTDDPVRMYLREMGSVELLSREGEIAIAKRIE----AGRNTMI 149