Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Pseudomonas fluorescens FW300-N1B4

Subject, 324 a.a., RpoD family RNA polymerase sigma factor (RefSeq) from Shewanella loihica PV-4

 Score =  400 bits (1027), Expect = e-116
 Identities = 210/308 (68%), Positives = 241/308 (78%)

Query: 28  MSNDEGDAPPSVRAKSKHSASLKQHKYIDYTRALDATQLYLNEIGFSPLLSPEEEVHFAR 87
           +S +E D   +   +    A L+Q    D  + LDATQLYL+EIGFSPLLS EEEV+F+R
Sbjct: 16  LSKNESDLSVTNSKEVLKDAELEQQVQDDLQKNLDATQLYLSEIGFSPLLSAEEEVYFSR 75

Query: 88  LSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFR 147
            +  G    R RMIESNLRLVVKIARRY NRGL+LLDLIEEGNLGLIRAVEKFDPERGFR
Sbjct: 76  KALKGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 135

Query: 148 FSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANL 207
           FSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLR AREL  KLDHEP+ EEIA  
Sbjct: 136 FSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAHKLDHEPTAEEIAEQ 195

Query: 208 LEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSQSIDQ 267
           L+ P  +V +ML LNER++SVD  LG D+DK LLD L DD    P   +QDDD+S+S+ +
Sbjct: 196 LDLPSSDVSKMLKLNERITSVDTPLGGDNDKALLDVLADDDCVGPDYKVQDDDMSKSVVR 255

Query: 268 WLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLREILEKNG 327
           WL EL  KQREV+ RRFGL G+E STLE+VG EIGLTRERVRQIQVE LKRLR++L   G
Sbjct: 256 WLDELNSKQREVLARRFGLLGYEPSTLENVGKEIGLTRERVRQIQVEALKRLRDLLSAQG 315

Query: 328 LSSESLFQ 335
           LS E++F+
Sbjct: 316 LSVEAIFR 323