Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Pseudomonas fluorescens FW300-N1B4

Subject, 328 a.a., RNA polymerase sigma factor RpoS from Dechlorosoma suillum PS

 Score =  310 bits (794), Expect = 3e-89
 Identities = 158/277 (57%), Positives = 212/277 (76%), Gaps = 5/277 (1%)

Query: 62  DATQLYLNEIGFSPLLSPEEEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLS 121
           D TQLYLNEIG  PLL+P EE+ ++R +++G+ A R++MIE NLRLVV IA+ Y+NRG+ 
Sbjct: 51  DVTQLYLNEIGAKPLLTPAEELEWSRRAKAGEFAARQKMIEHNLRLVVNIAKHYLNRGIP 110

Query: 122 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKEL 181
           LLDL+EEGNLGLI A+EKFDPERGFRFSTYATWWIRQ+IERAIMNQ+RTIRLP+HVVKE+
Sbjct: 111 LLDLVEEGNLGLIHALEKFDPERGFRFSTYATWWIRQSIERAIMNQSRTIRLPVHVVKEI 170

Query: 182 NVYLRAARELTQKLDHEPS----PEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSD 237
           NV LRA R L       PS     EE+A+LL KPV +++ +L LNE V+S+D  L  D +
Sbjct: 171 NVVLRAMRHLDGARGLTPSRETRVEEVAHLLGKPVDDIRHILHLNEHVASLDTPLDIDPN 230

Query: 238 KTLLDTLTDDRP-TDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLED 296
            T+ D++ DD    DP  +LQ+++L+  + QW+ +L +KQR+VV RR+GL+G E +TLE 
Sbjct: 231 HTVGDSVADDSAGADPVGVLQENELNDLVLQWVEQLPEKQRQVVERRYGLKGAEIATLEA 290

Query: 297 VGLEIGLTRERVRQIQVEGLKRLREILEKNGLSSESL 333
           +  ++GLTRERVRQIQ E L +LR I+++ G+  +S+
Sbjct: 291 IAADLGLTRERVRQIQGEALSQLRRIIKRGGVDRDSI 327