Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Pseudomonas fluorescens FW300-N1B4

Subject, 326 a.a., RNA polymerase, sigma 38 subunit, RpoS (RefSeq) from Shewanella sp. ANA-3

 Score =  396 bits (1017), Expect = e-115
 Identities = 212/318 (66%), Positives = 243/318 (76%), Gaps = 4/318 (1%)

Query: 18  LMETGIATDSMSNDEGDAPPSVRAKSKHSASLKQHKYIDYTRALDATQLYLNEIGFSPLL 77
           L++  + T     D+ D    + A       L+Q    D  + LDATQLYL EIGFSPLL
Sbjct: 12  LVDFSVDTAEFDLDKED----IAADLVQELGLEQQVQDDLQKNLDATQLYLGEIGFSPLL 67

Query: 78  SPEEEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAV 137
           S EEEV+F+R +  G    R RMIESNLRLVVKIARRY NRGL+LLDLIEEGNLGLIRAV
Sbjct: 68  SAEEEVYFSRKALKGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAV 127

Query: 138 EKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDH 197
           EKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLR AREL QKLDH
Sbjct: 128 EKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAQKLDH 187

Query: 198 EPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQ 257
           EP+ EEIA  L+    +V RML LNE+++SVD+ LG D+DK LLD L DD    P   +Q
Sbjct: 188 EPTAEEIAEKLQVSSVDVSRMLKLNEKITSVDIPLGGDNDKALLDVLADDDNVGPDYKVQ 247

Query: 258 DDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLK 317
           D+D+S S+ +WL+EL  KQREV+ RRFGL G+E STLEDVG EIGLTRERVRQIQVE LK
Sbjct: 248 DEDISNSVVKWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALK 307

Query: 318 RLREILEKNGLSSESLFQ 335
           RLR++L   GLS E+LF+
Sbjct: 308 RLRDLLGAQGLSVEALFR 325