Pairwise Alignments

Query, 274 a.a., Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 271 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  144 bits (364), Expect = 2e-39
 Identities = 87/258 (33%), Positives = 150/258 (58%), Gaps = 11/258 (4%)

Query: 17  IAAWGGLVFLHFPILIIFLYAFNTEDAAFSFPPKGFTLKWIGVAFSRPDVLEAIKLSLQI 76
           +  W GL+FL+ P+LI+ +Y+FN       +   GF+ KW G  F    +L+A+  SL+I
Sbjct: 9   VMLWFGLLFLYAPMLILVIYSFNESKLVTVWG--GFSPKWYGELFKDQQILDAVWTSLRI 66

Query: 77  AAVATLIALILGTLASAALYR-RDFFGKQGISLMLILPIALPGIITGIALLATFKTLGI- 134
           A  ++ +A+I+GT+A+  + R +  + K  +S M+  P+ +P +ITG++LL  F  +   
Sbjct: 67  AFYSSTMAVIIGTMAAFVMTRFKRSWAKLTLSNMITAPLVMPEVITGLSLLLLFVHMADL 126

Query: 135 -----EPGMFTIIVGHATFCVVIVYNNVIARLRRTSYSLIEASMDLGADGWQTFRYIVLP 189
                E GM T+ + H+TFC   V   V +RLR    S+ EA+MDLGA   +TF  I +P
Sbjct: 127 LGWPKERGMVTVWIAHSTFCAAYVAVVVSSRLRELDRSIEEAAMDLGATPLKTFFLITVP 186

Query: 190 NLGSAMLAGGMLAFALSFDEIIVTTFTAG-HERTLPLWLLNQLSRPRDVPVTNVVAMLVM 248
            +  A++AG +L+F+LS D++++++F +G    TLP+ + + + R    P  N +A L++
Sbjct: 187 MISPALVAGWLLSFSLSLDDLVISSFASGPGATTLPMVVFSSV-RLGVSPKINALATLII 245

Query: 249 MVTMLPILGAYYLTRGGE 266
           +   L    ++Y+ R  E
Sbjct: 246 LCVSLIAFLSWYMARRAE 263