Pairwise Alignments

Query, 366 a.a., GTP-binding and nucleic acid-binding protein YchF from Pseudomonas fluorescens FW300-N1B4

Subject, 365 a.a., GTP-dependent nucleic acid-binding protein EngD from Phaeobacter inhibens DSM 17395

 Score =  415 bits (1067), Expect = e-121
 Identities = 221/367 (60%), Positives = 263/367 (71%), Gaps = 5/367 (1%)

Query: 1   MGFNCGIVGLPNVGKSTLFNALTKSGIA-AENFPFCTIEPNTGIVPMPDPRLEALAAIVN 59
           MGF  GIVGLPNVGKSTLFNALTK+  A A NFPFCTIEPN G V +PD RL+ LAAI  
Sbjct: 1   MGFKMGIVGLPNVGKSTLFNALTKTASAQAANFPFCTIEPNVGEVGVPDARLDKLAAIAG 60

Query: 60  PKRILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDENVIHVSNSV 119
            K+I+PT M FVDIAGLV GAS+GEGLGN+FLANIRETDAIAHV+RCFED +V HV   V
Sbjct: 61  SKQIIPTRMTFVDIAGLVKGASQGEGLGNQFLANIRETDAIAHVLRCFEDGDVTHVDGRV 120

Query: 120 DPKRDIEIIDLELIFADLDSCEKQLQKVARNAKGGDKDAVVQKALLEQLIAHFTLGKPAR 179
           DP  D E+I+ EL+ +DL+S EK+   + R  KG DK+A  Q  LL    A    GKPAR
Sbjct: 121 DPVADAEVIETELMLSDLESIEKRRANLVRKLKGNDKEAQQQDRLLADAQAMLEEGKPAR 180

Query: 180 TLMKNMGADDKAVIRGFHLLTTKPVMYIANVAE-DGFENNPLLDIVKAIAEEEGAMVVPV 238
             +  + A+D    +   LLTTKPV+Y+ NV E +  E N     V  +A  +G   V +
Sbjct: 181 --LVEVDAEDAKAWKMLQLLTTKPVLYVCNVGESESVEGNEYSAKVAEMAAGQGNSHVII 238

Query: 239 CNKIEAEIAELEDGEEKDMFLEALGLEEPGLNRVIRAGYEMLHLQTYFTAGVEEVRAWTV 298
             +IE EI++LE  EE +MFL  +GL E GL+R+IRAGYE+LHL+TYFT G +E RAWT+
Sbjct: 239 SAQIEEEISQLEP-EEAEMFLSEMGLAEAGLDRLIRAGYELLHLETYFTVGPKEARAWTI 297

Query: 299 RVGATAPQAAGVIHTDFEKGFIRAEVIAYDDFIQYKGEAGTKEAGKWRLEGKDYIVKDGD 358
           R G  APQAAGVIH DFEKGFIRAE IAY+DFI + GE G KEAGK R EGK Y+VKDGD
Sbjct: 298 RTGTAAPQAAGVIHGDFEKGFIRAETIAYEDFIAHNGEQGAKEAGKMRAEGKGYVVKDGD 357

Query: 359 VMHFRFN 365
           V+HF FN
Sbjct: 358 VLHFLFN 364