Pairwise Alignments

Query, 366 a.a., GTP-binding and nucleic acid-binding protein YchF from Pseudomonas fluorescens FW300-N1B4

Subject, 363 a.a., conserved hypothetical protein TIGR00092 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  521 bits (1342), Expect = e-152
 Identities = 259/366 (70%), Positives = 307/366 (83%), Gaps = 3/366 (0%)

Query: 1   MGFNCGIVGLPNVGKSTLFNALTKSGIAAENFPFCTIEPNTGIVPMPDPRLEALAAIVNP 60
           MGF CGIVGLPNVGKSTLFNALTK+GI A NFPFCTIEPNTG+VP+PDPRL+ALAAIVNP
Sbjct: 1   MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPVPDPRLDALAAIVNP 60

Query: 61  KRILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDENVIHVSNSVD 120
           +R+LPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAI HVVRCF+D+N++HV+N VD
Sbjct: 61  QRVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFDDDNIVHVANKVD 120

Query: 121 PKRDIEIIDLELIFADLDSCEKQLQKVARNAKGGDKDAVVQKALLEQLIAHFTLGKPART 180
           P RDIE+I+ EL  ADLDS E+ + +  + AKGGDKDA  +  +LE++       K  R+
Sbjct: 121 PARDIEVINTELALADLDSLERAVIRQQKRAKGGDKDAKFEVEVLEKMRPVLDEAKMLRS 180

Query: 181 LMKNMGADDKAVIRGFHLLTTKPVMYIANVAEDGFENNPLLDIVKAIAEEEGAMVVPVCN 240
           +  ++  ++   +   + LT KP MYIANVAEDGF+NNP LD V+AIAE+E A+VV VC 
Sbjct: 181 M--DLSKEELEAVAYLNFLTLKPTMYIANVAEDGFDNNPHLDAVRAIAEKENAIVVSVCA 238

Query: 241 KIEAEIAELEDGEEKDMFLEALGLEEPGLNRVIRAGYEMLHLQTYFTAGVEEVRAWTVRV 300
            IE+E+AE+ D EE+D F+  LGLEEPGL+RVIRAGY++L LQTYFTAGV+EVRAWTV V
Sbjct: 239 AIESELAEM-DAEERDEFMADLGLEEPGLDRVIRAGYQLLSLQTYFTAGVKEVRAWTVSV 297

Query: 301 GATAPQAAGVIHTDFEKGFIRAEVIAYDDFIQYKGEAGTKEAGKWRLEGKDYIVKDGDVM 360
           GATAPQAAGVIHTDFE+GFIRA+V+A+DDFI YKGEAG KEAGK R+EGK YIV+DGDVM
Sbjct: 298 GATAPQAAGVIHTDFERGFIRAQVVAFDDFIAYKGEAGAKEAGKLRVEGKTYIVQDGDVM 357

Query: 361 HFRFNV 366
           HF FNV
Sbjct: 358 HFLFNV 363