Pairwise Alignments

Query, 478 a.a., Two-component sensor CbrB: intrcellular carbon:nitrogen balance from Pseudomonas fluorescens FW300-N1B4

Subject, 454 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  312 bits (800), Expect = 1e-89
 Identities = 193/475 (40%), Positives = 269/475 (56%), Gaps = 34/475 (7%)

Query: 2   PH-ILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIPTFDLIVSDLRLPGAPG 60
           PH IL+VEDE  +R  ++  L R  Y+V+ A + + A+       FDL+++DLRLPG  G
Sbjct: 3   PHSILLVEDELSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLPGMSG 62

Query: 61  TELI----KLGQGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILR-- 114
            EL+    ++  GT V+++T++  +  AV ++K GA D++ KPF  D +L AV R  R  
Sbjct: 63  MELLDSIREMHPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFQSDGLLIAVERFFRFL 122

Query: 115 --DRQSAQASGEPVVGKTSNGAAKNGVDNSNGEIGIIGSCPPMQDLYSKIRKVAPTDSNV 172
              R++ +  GE   G+                   IG  P M  ++ +IR +A     V
Sbjct: 123 DLKRENDRLRGEREEGE------------------FIGESPAMLKVFDRIRALADACVPV 164

Query: 173 LIQGESGTGKELVARALHNLSKRAKAPMISVNCAAIPESLIESELFGHEKGAFTGASAGR 232
           L+ G SG+GKELVA ALH  SKR   P I +NCAA+PE L+ESELFGHEKGAFTGA   R
Sbjct: 165 LVLGPSGSGKELVAGALHRRSKRRDRPFIKINCAALPEQLLESELFGHEKGAFTGAQQAR 224

Query: 233 AGLVEAADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDL 292
            G  EAADGGTLF DE+GE+PL  QA+LLRVL++ E+  VG    +KV+VR + AT R+L
Sbjct: 225 IGKFEAADGGTLFFDEVGEMPLPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNL 284

Query: 293 KSLAKIGQFREDLYYRLHVIALKLPALRERGADVNEIATAFLARQSARVGRTDLKFALDA 352
           +     G+FREDLYYR++V+ + LP LRERG+DV  +   FL R  A +       +  A
Sbjct: 285 EEAIADGRFREDLYYRINVVPVTLPPLRERGSDVALLTERFLRRFCA-LHERQATLSEQA 343

Query: 353 EQAIRHYSWPGNVRELENAVERAVILCESPEISAELLGIDIELSDLDDDDFIGLAPQQGN 412
             A+  Y +PGNVREL NAVE AV+LC   EI    L   I  +         + P   +
Sbjct: 344 RLALLAYDYPGNVRELRNAVEHAVLLCTEGEIHVGHLPERIRAATQ------SMPPACDD 397

Query: 413 GAGNTSHEPTEDLSLEDYFQHFVLEHQDHMTETELARKLGVSRKCLWERRQRLGI 467
            AG+T     E ++  +  +      +    + + A  LG+SRK LW + + L I
Sbjct: 398 DAGDTPASLAEGVARFERRRIMEALERTGGRKIQAADLLGISRKQLWLKLKELSI 452