Pairwise Alignments

Query, 557 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N1B4

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  419 bits (1078), Expect = e-121
 Identities = 237/553 (42%), Positives = 352/553 (63%), Gaps = 20/553 (3%)

Query: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67
           F+   LN  IL+A+   G+  P+ IQ  +IP+++ G D +G+AQTGTGKTAAF+LP+L++
Sbjct: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87

Query: 68  IDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQ 127
           ++ ++ +PQA+++APTRELA+QVA   +   + + G+ V+ +YGGA +  Q++A+++GA 
Sbjct: 88  LNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAH 147

Query: 128 IVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQTVLFS 187
           IVV TPGR+ D + RD   L   +  +LDEADEMLK+GF+DD+  I +  P + Q VLFS
Sbjct: 148 IVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFS 207

Query: 188 ATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDA 247
           AT+P  ++ I ER LR+P+ V +    QTV  +EQ + +V   +K  A+  LLE E+ DA
Sbjct: 208 ATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDA 267

Query: 248 LIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAAR 307
            I+FVRT+Q T  LA  L A+G+KAAAL+GDI Q+ RER ++ +K G +DI+VATDV AR
Sbjct: 268 SIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVAR 327

Query: 308 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQK 367
           GLDVPRITHV+N D+P+D ESY+HRIGRTGRAGR+G+A+LLV   + RML+ IERVT   
Sbjct: 328 GLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387

Query: 368 VAEVRLPDAQAVLDARIKKLTNSLSPLVADAE----STHGDLLDRLTADIGCTPRALAAA 423
           + E++LP    V ++R+ KL   L+   AD E        DL+++L A +      LAA 
Sbjct: 388 MEEIQLPHRDKVAESRLTKLGQELA---ADKEFSSLERFADLVEKLQASLEIDATTLAAI 444

Query: 424 LLRKATNAQAL-------TLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPL 476
           LL++    + L        + A+E+E+        R DR  R GDRP R  RE       
Sbjct: 445 LLKRQQGKRPLFYVGADPMIEAMEREKS--RRRERRDDR--RDGDRPAR--REFGGRDQE 498

Query: 477 AEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLL 536
                  +  +G   G+  K+++GA+ NE GL + +IG I++    + V+LP+     + 
Sbjct: 499 NHDWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVS 558

Query: 537 TKLKDTRVAGKQL 549
           +KL+  R+  K++
Sbjct: 559 SKLRKLRIRQKEV 571