Pairwise Alignments

Query, 557 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N1B4

Subject, 503 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  296 bits (759), Expect = 1e-84
 Identities = 157/368 (42%), Positives = 233/368 (63%), Gaps = 7/368 (1%)

Query: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67
           F    L+ +I+A + A G+E+P+ IQ Q+IP+++  HD+IG AQTGTGKTAAF LP++ +
Sbjct: 4   FKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEK 63

Query: 68  IDPAKREP-----QALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAI 122
           +    R P     +AL+LAPTREL  Q+A   + + K+ P + +  V GG  +  Q + +
Sbjct: 64  LVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSP-LKIGLVVGGVSINKQTEQL 122

Query: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQ 182
             G  I+VATPGRL D + R    L    +LVLDEAD+ML LGF+ DL  I K +P  RQ
Sbjct: 123 ARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQ 182

Query: 183 TVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQ-AHLLVHADQKTSAVLSLLE 241
           T+LFSAT+P+ I  +A  +L DP  V++    +    +EQ  H +   D KT+ +   L 
Sbjct: 183 TLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLT 242

Query: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301
                  ++F RTK     L   L+  G+KAA+++G+ +Q QRER +++ +DG + ++VA
Sbjct: 243 ANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVA 302

Query: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361
           TDVAARG+D+P +THV+N D+P  P++YVHRIGRT R GR+G A+    P E R+L+ IE
Sbjct: 303 TDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIE 362

Query: 362 RVTGQKVA 369
           ++ G ++A
Sbjct: 363 KLMGIQIA 370