Pairwise Alignments

Query, 557 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N1B4

Subject, 599 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  456 bits (1172), Expect = e-132
 Identities = 263/570 (46%), Positives = 357/570 (62%), Gaps = 25/570 (4%)

Query: 1   MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF 60
           M+     F    L+  +L A+   GYE+P+ IQ  SI  +MAG D++GQAQTGTGKT AF
Sbjct: 1   MSSSEKTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAF 60

Query: 61  ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK 120
           ALP+L+ IDP +  PQ L+LAPTRELA+QVA AF +Y+K M G+ V+ +YGG  M  QL 
Sbjct: 61  ALPLLNAIDPNRNVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLN 120

Query: 121 AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPAT 180
           A+R G QIVV TPGR+ DH+RR    L T+N LVLDEADEMLK+GF+DD+E I +  P  
Sbjct: 121 ALRRGPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQE 180

Query: 181 RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
           RQ  LFSAT+P+ I+ +A ++L+ P H+ I     TV +IEQ  + V    K  A++ +L
Sbjct: 181 RQLALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVL 240

Query: 241 EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV 300
           EVE+ + +I+FVRT+ + ++LA  LEA+GY ++ L+GD+ Q  RER ++ LK G+LDI++
Sbjct: 241 EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI 300

Query: 301 ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI 360
           ATDVAARGLDV RI HV N D+PYD E+YVHRIGRTGRAGR G A+L VT RE RML+ I
Sbjct: 301 ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI 360

Query: 361 ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAES---THGDLLDRLTADIGCTP 417
           ER T  +++ + +P  + V + R+ +L   +S  + D ES    HG  + +L   +    
Sbjct: 361 ERATKSRISPMNVPSPETVAERRLSRLGEQVSNTI-DNESLDFMHG-AVAQLCQQLEVDT 418

Query: 418 RALAAALLRKATNAQALTLAAI-EKERPL--VPNNAPRGDRPERTGDRPDRGDRERRAPV 474
             LAAALL      + L L  I E++R      N+  RGDR     DR  RG RE R P 
Sbjct: 419 EVLAAALLNMVQQERPLQLPPIQERQRDSRDERNSRDRGDR----SDRAPRGRRESR-PT 473

Query: 475 PLAEGRA----------RCRTAL--GARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSF 522
           P   G+A           CR  L  G   G+   N++GA+ NE  +    IG+IQ+ D  
Sbjct: 474 PANLGQADTLKDHPDVKMCRYVLDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDQI 533

Query: 523 SLVELPEDGLEKLLTKLKDTRVAGKQLKLR 552
           + ++LPE   + +L  LK  RV GK L +R
Sbjct: 534 TSIDLPEGMPKDVLQHLKKVRVCGKPLNIR 563