Pairwise Alignments

Query, 429 a.a., GGDEF domain protein from Pseudomonas fluorescens FW300-N1B4

Subject, 564 a.a., response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score = 92.8 bits (229), Expect = 2e-23
 Identities = 102/340 (30%), Positives = 152/340 (44%), Gaps = 66/340 (19%)

Query: 114 WQERTHLFQDMVARFAVLLAFGSVA-----LGLEQSYPQALLMWLSEIRWPALHGAWMSL 168
           W E + +    +     L  FG++      LGL Q  P A  +  + + W  + G  ++ 
Sbjct: 250 WPENSWMANKSLLLLLALSLFGALRFTREILGLAQILPGADRL-AARVEWGCVLGLILAP 308

Query: 169 IQLSYPV----------FIASFLLLA--WQYWRNPRPLH---AAQLVGLLGLFWMLPKTF 213
           I LSY +          FI   LL+       +  RP      A    LLG F  + K+F
Sbjct: 309 I-LSYHLVVLLLSVLTTFICIQLLVVGVMALMKGSRPARFYLVAFSALLLGAFVYMLKSF 367

Query: 214 -ILP--------FTLNIMCSQVMLMIA-AAVAHEAYQMAFRDELTGLPGRRALNERMQ-- 261
            +LP        F L  +   V+L +A  +   +  +    D LTGL  RR  +E++Q  
Sbjct: 368 GVLPHNAFTQNAFQLGSLVEMVLLSLALGSRMQDIKRRNHIDVLTGLYNRRFFDEQLQQE 427

Query: 262 -----RLGRNYVLAMGDVDHFKKFNDTHGHDVGDQVLRLVASKLS-KISGGGRAYRYGGE 315
                R  +   L + D+D+FK+FND+ GH  GD+ L+LVA  L+  +   G A RYGGE
Sbjct: 428 YLKACRRHQPLSLLVLDIDYFKQFNDSRGHAEGDKALQLVADILAGTVQKPGMACRYGGE 487

Query: 316 EFALVFAGKTLEECMPHLEVIRESIATYNIQLRNQDNRPQDDQQGRQRRAGSGASSVSVT 375
           EFAL+    +  E M   E IRE +      +R+   R                  + +T
Sbjct: 488 EFALILPETSAGEAMQLAERIREKV------VRDTKER------------------IELT 523

Query: 376 VSIGVAE--RLEQRTPEEVLKSADQALYSAKGAGRNCVMA 413
           VSIG +E    +  +   + ++AD+ALY AK  GRNCV A
Sbjct: 524 VSIGCSEFDAKQHLSGFALFEAADEALYRAKADGRNCVRA 563