Pairwise Alignments

Query, 619 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N1B4

Subject, 533 a.a., DEAD-box ATP dependent DNA helicase (RefSeq) from Shewanella amazonensis SB2B

 Score =  471 bits (1211), Expect = e-137
 Identities = 262/542 (48%), Positives = 340/542 (62%), Gaps = 31/542 (5%)

Query: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSFASLGLS  +++A++  GY  P+P+Q +AIP VL+GRDL+ AAQTGTGKT GF LP+L
Sbjct: 1   MSFASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           E L       ++Q+ GP+Q R L+LTPTRELAAQ+ ++   Y++ L   S  +FGGVG+ 
Sbjct: 61  ELL------SQTQKAGPKQVRALILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIG 114

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+  + RG+D+LVA PGRLLDL  Q +V    +EILVLDEADRMLDMGF+HD+K++L  
Sbjct: 115 PQITTLRRGIDILVATPGRLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKL 174

Query: 181 LPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL 240
           LP+KRQNLLFSATFS +I  LA  LLHN   + VTP N+  E ++Q +  +  N K +LL
Sbjct: 175 LPAKRQNLLFSATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPVDKNQKPALL 234

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV 300
           A L     W+QVLVF RTKHGANRL   +D  G+ A AIHGNKSQNART+ALADFK G +
Sbjct: 235 AELTRFYRWQQVLVFCRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAI 294

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+L+ATDIAARG+DI +LP+VVNFELP+V EDYVHRIGRTGRAG SGEA SLV  +E K 
Sbjct: 295 RMLIATDIAARGIDISELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLVCNEEAKQ 354

Query: 361 LKSIERMTKQKIADGNLMGFDSSAVEAEKPEVRERPDVRNPRNPRGPRGDGPNGSGGGGG 420
           L+ IER+ KQ +     +GF+        P     P     ++  G    G        G
Sbjct: 355 LRDIERLIKQSLPRKEFVGFE--------PVHGLPPSENQGKSKPGGSKQGAKPGNKSQG 406

Query: 421 RKDKGKDKGGKEKPAATGRGD--------RPAREHKPRE----GTPAREQQRPAPRAAAD 468
           RK +G+ +  + K     R           P+R  +PR        AR ++  + RA  D
Sbjct: 407 RKPQGQSRNAQPKQRQGSRAQEERSQQDKNPSRSEQPRRERRGNDQARSERPHSARAHGD 466

Query: 469 RAPDEFLDDDVDNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAPRTG-QPQGR-QNGPRS 526
           +A  +    +      R D     KP   R  RP      +  PR+G +PQG+ Q  PRS
Sbjct: 467 KARSDNARSENGRSDARTDSARNDKP---RSDRPNTDRAASNKPRSGNRPQGQGQQRPRS 523

Query: 527 SS 528
           S+
Sbjct: 524 SA 525



 Score = 32.3 bits (72), Expect = 5e-05
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 512 PRTGQPQGRQNGPRSSSGATTGTPPAKRSGPRNGAPRDGQARREESRNRRPARDEQPRSE 571
           P  G P     G     G+  G  P  +S    G    GQ+R  + + R+ +R ++ RS+
Sbjct: 376 PVHGLPPSENQGKSKPGGSKQGAKPGNKS---QGRKPQGQSRNAQPKQRQGSRAQEERSQ 432

Query: 572 PAVQNPRGPAPKIIHKESKSDRFPTPEQLDQLPGRPRGEK 611
                 R   P+   + +   R   P        R  G+K
Sbjct: 433 QDKNPSRSEQPRRERRGNDQARSERPHS-----ARAHGDK 467