Pairwise Alignments

Query, 619 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N1B4

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  464 bits (1194), Expect = e-135
 Identities = 256/488 (52%), Positives = 325/488 (66%), Gaps = 32/488 (6%)

Query: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSF SLGLS  +++A+   GY  P+P+Q +AIPAVL G+D+M AAQTGTGKT GF LP+L
Sbjct: 1   MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           E L       +  R   +Q R LVLTPTRELAAQ+ ES   Y + L   SA +FGGVG++
Sbjct: 61  ELL------SQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGIS 114

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+  + RGVD+LVA PGRLLDL  Q +V  S +E LVLDEADRMLDMGF+HD+KK+LA 
Sbjct: 115 PQISQLKRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAI 174

Query: 181 LPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL 240
           LP KRQNL+FSATFS +I  LA  L++NP  I VTP N+T   ++Q +  +  N K + L
Sbjct: 175 LPPKRQNLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAAL 234

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV 300
             LI  G W+QVLVF+RTKHGANRLA++L+  G+TA AIHGNKSQ ARTKALA+FK+G+V
Sbjct: 235 VKLIQQGDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDV 294

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATDIAARGLDIDQLP VVNF+LPNV EDYVHRIGRTGRAG  G+A+SLV+ +E KL
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKL 354

Query: 361 LKSIERMTKQKIADGNLMGFDSSAVEAEKPEVRER-PDVRNPRNPRGP------------ 407
           L  IER+  + +    + GF+ +    E     +R    + PRNP+              
Sbjct: 355 LADIERLIGKLLPRAEVEGFEPTHTLPETNLTPKRHGQHKGPRNPKPKSNSQRSSNRSSN 414

Query: 408 -----------RGDGPNGSGGGGGRKDKGKDKGGKEKPAATGRGDRPAREHKPREG-TPA 455
                      RGD   G+  G GR+  G    G  KPA+ G+  +   + + R+G  PA
Sbjct: 415 GQRSDKAGQPRRGDQAQGNKEGQGRRRTGAST-GTSKPASEGQQAQNQGKQEHRDGNAPA 473

Query: 456 REQQRPAP 463
           R ++R  P
Sbjct: 474 RRRRRRRP 481



 Score = 28.5 bits (62), Expect = 7e-04
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 517 PQGRQNGPRSSSGATTGTPPAKRSGPRNG----APRDGQARRE---ESRNRRPARDEQPR 569
           P+ + N  RSS+ ++ G    K   PR G      ++GQ RR     +   +PA + Q  
Sbjct: 399 PKPKSNSQRSSNRSSNGQRSDKAGQPRRGDQAQGNKEGQGRRRTGASTGTSKPASEGQQA 458

Query: 570 SEPAVQNPR-GPAP 582
                Q  R G AP
Sbjct: 459 QNQGKQEHRDGNAP 472