Pairwise Alignments

Query, 619 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N1B4

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  452 bits (1163), Expect = e-131
 Identities = 277/589 (47%), Positives = 344/589 (58%), Gaps = 75/589 (12%)

Query: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSF++LGLS  L +A+   GY  P+P+Q +AIPAVL G+D+M AAQTGTGKT GF LP+L
Sbjct: 1   MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           E L   GH  KS      Q R LVLTPTRELAAQV ES + Y + L   SA +FGGV +N
Sbjct: 61  E-LLAKGHKAKSG-----QTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPIN 114

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+  +  GVDVLVA PGRLLDL  Q +V  + +EILVLDEADRMLDMGF+ D+KK+LA 
Sbjct: 115 PQINKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILAL 174

Query: 181 LPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL 240
           LP+KRQNL+FSATFS +I +LA  L+++P  I VTP N     ++Q +  +    K +LL
Sbjct: 175 LPAKRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALL 234

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV 300
             LI    W+QVLVF+RTKHGANRLA+ L +  ++A AIHGNKSQ ARTKALADFK+GEV
Sbjct: 235 IQLIKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEV 294

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATDIAARGLDIDQLP VVNF+LPNV EDYVHRIGRTGRAG +G+A+SLV+ +E KL
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKL 354

Query: 361 LKSIERMTKQKIADGNLMGFDSSAVEAEKPEVRERPD-----VRNPRNPRGPRGDGPNGS 415
           LK IER+  + +    + GF  S V A  PE    P      V+   N R  R  G    
Sbjct: 355 LKDIERLINRVLERQEVEGF--SPVHA-LPETTLNPQGKDTKVKAVANHRKHRSAGKPAP 411

Query: 416 GGGGGRKDKGKDKGGKEKPAATGRGDRPAREHKPREGTPAREQQRPAPRAAADRAPDEFL 475
             G GR  +G  +  + + +A+ R    + EH   E             AA  R+P    
Sbjct: 412 RSGSGRDTQGNRENSQRQNSASSRN---SNEHNNTE-------------AAVARSP---- 451

Query: 476 DDDVDNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAPRTGQPQGRQNGPRSSSGATTGTP 535
                            KP     +R G  A  A A                        
Sbjct: 452 -----------------KPKSKHPQRDGGTANSATAGNNA-------------------- 474

Query: 536 PAKRSGPRNGAPRDGQARREESRNRRPARDEQPRS-EPAVQNPRGPAPK 583
              ++ P +GA +   A R E  N    R EQP+   P    P    PK
Sbjct: 475 ---KAKPHSGAQQRSHAERSEKSNNDGRRQEQPKGRNPQSAKPASNQPK 520