Pairwise Alignments

Query, 205 a.a., Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) from Pseudomonas fluorescens FW300-N1B4

Subject, 199 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Vibrio cholerae E7946 ATCC 55056

 Score =  150 bits (380), Expect = 1e-41
 Identities = 85/196 (43%), Positives = 112/196 (57%), Gaps = 8/196 (4%)

Query: 4   PSRPKKPVHNVHNGVNQLRIIGGEWGSRKLSFPDAPGLRPTPDRVRETLFNWLAPYVAGA 63
           PS+ K P         Q+RII G W  RKL   DA GLRPT DRV+ETLFNWLA  V  A
Sbjct: 9   PSQKKAPT-------GQVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQEVPNA 61

Query: 64  KVLDPFAGSGALFLEALSRGAAMGQALDASNIAVASIKEHLGTLRCTTGQVQTADALRYL 123
           + LD FAGSG L  E  SR A     L+ + +A   +K ++ +L+    ++   DAL +L
Sbjct: 62  RCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQSLKAENIELIHTDALAFL 121

Query: 124 ETQPATAFDLVFLDPPFNQNLLPAVCTLLEERHWLSDDAWVYTESETAPSILGLPENWRL 183
             Q    +D+VF+DPPF Q LL     LLE+  WL+  A +Y E E    +  LP +W L
Sbjct: 122 R-QSGKPYDVVFIDPPFRQGLLQETTQLLEQNGWLAPQAMIYIECEKELPLTELPPHWHL 180

Query: 184 HREQKSGRVYYALWQR 199
           HRE+ +G+V Y L+ R
Sbjct: 181 HREKSAGQVCYRLFIR 196