Pairwise Alignments

Query, 205 a.a., Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) from Pseudomonas fluorescens FW300-N1B4

Subject, 190 a.a., conserved hypothetical protein TIGR00095 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  159 bits (402), Expect = 3e-44
 Identities = 81/181 (44%), Positives = 113/181 (62%)

Query: 21  LRIIGGEWGSRKLSFPDAPGLRPTPDRVRETLFNWLAPYVAGAKVLDPFAGSGALFLEAL 80
           +RII G+W SRKL   D  GLRPT DRVRETLFNWLA  +A A+VLD F GSGAL LE+L
Sbjct: 1   MRIIAGQWRSRKLPIHDLDGLRPTTDRVRETLFNWLANDIAHARVLDCFGGSGALALESL 60

Query: 81  SRGAAMGQALDASNIAVASIKEHLGTLRCTTGQVQTADALRYLETQPATAFDLVFLDPPF 140
           SR A+  + ++    A   +K +L TL+C   +V  AD L  L+      FD+VF+DPPF
Sbjct: 61  SRYASYAKIIELQRTAAMQLKANLNTLKCDKAEVINADTLVVLQNGCDQGFDVVFIDPPF 120

Query: 141 NQNLLPAVCTLLEERHWLSDDAWVYTESETAPSILGLPENWRLHREQKSGRVYYALWQRM 200
            + L      LL+ + WL+D A +Y E E   + + +P +W+  +++ +G+V Y L+Q  
Sbjct: 121 RKGLAEKTIQLLDSKGWLNDGALIYVEIEAELTQMAIPASWQPLKDKTTGQVSYRLYQYQ 180

Query: 201 A 201
           A
Sbjct: 181 A 181