Pairwise Alignments

Query, 466 a.a., TPR domain protein from Pseudomonas fluorescens FW300-N1B4

Subject, 469 a.a., TPR repeat-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  108 bits (269), Expect = 5e-28
 Identities = 113/446 (25%), Positives = 184/446 (41%), Gaps = 77/446 (17%)

Query: 13  LALQLTGCA---AYRDYDLELEQTTAQLKAGNPQGALQLLELHNPSEERD-LLYYFEKGA 68
           L+L L+GCA    +  Y  +L    A+L  G    A    +  +    +D LLY  E G 
Sbjct: 24  LSLTLSGCAFNSVFISYPSQLAPVKAEL--GRQGDAALYRQFDDAITGQDGLLYAQEAGR 81

Query: 69  VLSAGGALPQSQVAWRSA--------EQMVIQRQDTVESAGTQLLSAMGDHWGSIINDKL 120
           +    G    S+  +R A        EQ VI   D   +A +             IND +
Sbjct: 82  IAQITGNFEASKAYYRQAVDAYQKFDEQAVISASDLGATASSLF-----------INDNV 130

Query: 121 RRYDGYDYEKVMLTTQMALNQLAVNDFDGARADIKKTHEREALIARQREKEYERLEEEAK 180
             Y G  YE++ML    ALN L   D  GA  ++++++E +   + Q   +  +   +A 
Sbjct: 131 IPYRGPGYERIMLHQYQALNYLFSRDSQGALVEVRRSNELQQ--SEQARYQKSQASVQAM 188

Query: 181 AQGVRVHYKDLQGYPVMTLDAP------AVIALKNGYQSAFSHYLAGFTYEALGERDLAA 234
           A G              T+DA       A     + + +A+S+Y  G  +E LGE + A 
Sbjct: 189 ANG--------------TIDAEVNRLGQAAGTTTSSFLNAYSYYTTGLLHELLGEENDAF 234

Query: 235 PGYRQAIELRPDLPFFEQALREL-----------------DKPAAKANESDVLVIVQSGL 277
             YR+A ++ PD P+ +Q L  L                 D   AKA +  V+++++ G 
Sbjct: 235 IDYRKAAQISPDNPYLQQDLVRLAKKLAMPQYEEFKRRWGDAKLAKAGQGQVVILLERGF 294

Query: 278 APARSSVRVPYPVRLEDNQVIVANVSFPVMVPDTSTPAFTQMTIDGRKQQLTLVNSITDM 337
            P + S  VP+  R+  N       S     P   +    ++   G   Q   + +I  +
Sbjct: 295 VPEKQSFTVPF--RIHGNW---QTASLATYAPGRVSAPQGEIVGLGTVLQTAPLANIDAL 349

Query: 338 SLRTLRDDMPGIIQRTAHRAY----LAASVQATDNRRDPSKASYVTQHDDF----EHADT 389
           ++  L++++P  + R A R Y    +A SV++   RR+    +       F    E AD 
Sbjct: 350 AITALKEELPSALFRQAARIYAKAEMARSVRSESKRRNDEFDAGAIAMQIFNVVTEQADR 409

Query: 390 RTWRTLPNITLVARLRLKKGEHLISL 415
           R+W TLP    + R  L  G++ I L
Sbjct: 410 RSWLTLPKQAQLGRRYLDAGQYQIRL 435