Pairwise Alignments

Query, 464 a.a., TPR domain protein from Pseudomonas fluorescens FW300-N1B4

Subject, 469 a.a., TPR repeat-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  134 bits (337), Expect = 6e-36
 Identities = 119/444 (26%), Positives = 195/444 (43%), Gaps = 58/444 (13%)

Query: 3   FRAPALIALSAVTLLSGC---SAFRNYDSELAQTNQQLASGNVEAALTLLEKNNTGKDKD 59
           +RA    AL ++TL SGC   S F +Y S+LA    +L      A     +   TG+D  
Sbjct: 15  YRAAFAGALLSLTL-SGCAFNSVFISYPSQLAPVKAELGRQGDAALYRQFDDAITGQD-G 72

Query: 60  LLYYFEKGELLRAKGDLSGSQNAWTSADQVVGKWEDAVKLDTDKYLAQFGSFLVNDKVRR 119
           LLY  E G + +  G+   S+  +  A     K+++   +      A   S  +ND V  
Sbjct: 73  LLYAQEAGRIAQITGNFEASKAYYRQAVDAYQKFDEQAVISASDLGATASSLFINDNVIP 132

Query: 120 YEGYDYEKVMLTTQMALNLLAVNDFDGARTAIKKTHEREAVIADLRDKEYLKSEEQAEKE 179
           Y G  YE++ML    ALN L   D  GA   +++++E             L+  EQA  +
Sbjct: 133 YRGPGYERIMLHQYQALNYLFSRDSQGALVEVRRSNE-------------LQQSEQARYQ 179

Query: 180 GVKTQYKDLQGYPVASLDAPEVVSL-------KNSYQSAFSHYLAGFVYEALGEKDLAAP 232
             K+Q   +Q     ++DA EV  L        +S+ +A+S+Y  G ++E LGE++ A  
Sbjct: 180 --KSQ-ASVQAMANGTIDA-EVNRLGQAAGTTTSSFLNAYSYYTTGLLHELLGEENDAFI 235

Query: 233 GYRKAVELRPNTPLLEQALVNLDKP------------------AKSDDSDILIVVQSGLA 274
            YRKA ++ P+ P L+Q LV L K                   AK+    ++I+++ G  
Sbjct: 236 DYRKAAQISPDNPYLQQDLVRLAKKLAMPQYEEFKRRWGDAKLAKAGQGQVVILLERGFV 295

Query: 275 PSRDSIRIPLPLPISNNVVITPLSFPIIKPDTSTATFAQIGVDGQQLNLTQLNSTTAMSR 334
           P + S  +P  +  +        S     P   +A   +I   G  L    L +  A++ 
Sbjct: 296 PEKQSFTVPFRIHGNWQTA----SLATYAPGRVSAPQGEIVGLGTVLQTAPLANIDALAI 351

Query: 335 RALRDDMPGIILRTTVRAITRGVAQKQI-------NETNPLAGLAVGITSAVLEGADTRT 387
            AL++++P  + R   R   +    + +       N+      +A+ I + V E AD R+
Sbjct: 352 TALKEELPSALFRQAARIYAKAEMARSVRSESKRRNDEFDAGAIAMQIFNVVTEQADRRS 411

Query: 388 WRTLPDNTQVVRLRLKKGEHHVTL 411
           W TLP   Q+ R  L  G++ + L
Sbjct: 412 WLTLPKQAQLGRRYLDAGQYQIRL 435