Pairwise Alignments

Query, 210 a.a., Homoserine/homoserine lactone efflux protein from Pseudomonas fluorescens FW300-N1B4

Subject, 207 a.a., transporter, LysE family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  115 bits (288), Expect = 6e-31
 Identities = 71/205 (34%), Positives = 106/205 (51%), Gaps = 1/205 (0%)

Query: 1   MVLQTWLAFFAACWVISLSPGAGAIASMSSGLRYGFWRGYWNALGLQLGLALQIAIVAAG 60
           M  +TWL +F A  +I +SPG  A+ SMS G+ +G  R     LG      + +A  AAG
Sbjct: 1   MQTETWLLYFFAIVLIGISPGPIAMLSMSHGIHFGKKRSIATGLGSVSAALILMAASAAG 60

Query: 61  VGAILAASATAFYAIKWFGVAYLVYLAVKQWRALPNDMNDDAAIRQIGKPMALVFR-GFL 119
           +GAI++AS   F  +KW G AYLV+L +K           +    +    +  +F+  FL
Sbjct: 61  LGAIISASEYGFTILKWCGAAYLVFLGIKLLLTKQQGQTLEVVKTEGKGTLKQLFKQAFL 120

Query: 120 VNVSNPKALVFMLAVLPQFIDPHAPLVAQYLILGVTMICVDLIVMAGYTGLAAKVLRLLR 179
           V +SNPK L+F  A+ PQFID  AP + Q  IL +T   VD   +  Y  +A  +   L+
Sbjct: 121 VGISNPKDLLFFAALFPQFIDLTAPQLPQLTILALTWALVDFSFVMIYASMANVLAPSLK 180

Query: 180 TPKQQKRMNRTFAGLFIGAAAFMAT 204
              +    +RT  G+F+  AA + +
Sbjct: 181 ASNKLHWFDRTSGGVFLTLAAILVS 205