Pairwise Alignments

Query, 265 a.a., O-antigen export system permease protein RfbD from Pseudomonas fluorescens FW300-N1B4

Subject, 294 a.a., ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  121 bits (303), Expect = 2e-32
 Identities = 78/265 (29%), Positives = 135/265 (50%), Gaps = 5/265 (1%)

Query: 3   LSLYRSLWGYRGFILGSVKREFQARYRNSLFGALWTVLNPLSMIVVYTVIFSHVMRARL- 61
           ++L R+L   R   +  ++R+  ARYR +  G LW +  P+ ++ VYT +F  + +A   
Sbjct: 33  VTLLRTLVARRDLFMQLLRRDIAARYRGTCLGWLWVLATPVLVLGVYTFVFGVIYQASRF 92

Query: 62  -PGVDDGMAYSIYLCAGLLTWGLFSEITLRSQNMFLENANLLKKISFPRICLPVIVLFNA 120
             GV D   Y++ L  G + W LF+E+T  +  +     + ++K+ FP   LPV+ L  +
Sbjct: 93  SGGVGD---YALMLFCGFVPWWLFAEVTGGAPTLIQARPSFVQKMCFPLEILPVVHLGVS 149

Query: 121 GINFAIIIGLFLGFLLITGRLPGMALLALLPLIALQVMFCAGLGMILGVLNVFFRDVGQL 180
             N    + + L  L + G    + LL +  L     ++  G   +L  L VF RD+   
Sbjct: 150 LFNSLAALVILLAALAMKGMPFHLTLLWIPALYVPLCLWSLGGAFLLSALGVFLRDMQHA 209

Query: 181 FAICLQFWFWLTPIVYPLSILPEWVQRLLQLNPLTNLMGSYQNLFLYGQWPVWSSLLPIF 240
            ++ LQ  F+ TPIVY L ++PE  + LL+ NP+T ++ +++++  +GQ P   SL  + 
Sbjct: 210 VSVALQLLFFATPIVYQLDMVPEQWRFLLRCNPMTEIVEAFRHVIYFGQAPEPVSLGIVT 269

Query: 241 VIGVLFCVIGLRLFRQRVGEMVDEL 265
           V+G     +G  +F Q      D L
Sbjct: 270 VLGACVLWVGHLVFMQARKAFADVL 294