Pairwise Alignments

Query, 366 a.a., Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake from Pseudomonas fluorescens FW300-N1B4

Subject, 374 a.a., SMF protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  194 bits (492), Expect = 4e-54
 Identities = 128/313 (40%), Positives = 177/313 (56%), Gaps = 22/313 (7%)

Query: 5   ACTSISPAELEARLRLHRLPELGPARFKKLLEAFGSASKAISA-PASAWRALGL------ 57
           A   ++ +E   RLRL R   +GP  +++L+  +GSA+ A+ A P  A R  G       
Sbjct: 4   AARPLTASEKLDRLRLLRTENVGPITWRRLMARYGSAASALDALPDLARRGGGAKPLRIC 63

Query: 58  PLACAEARRSSEIRDRASHALAWLERPGQHLLMWDQPDYPALLAQISDAPPLLFAAGDPG 117
           PLA A+         R    LA L+     ++  D+ DYP  LA I DAPP+    G  G
Sbjct: 64  PLAAAK---------REMDTLAGLDAT---MVFLDEADYPPALAAIEDAPPMFCLRGALG 111

Query: 118 ILEKPQLAMVGSRRASRPGMDTAAAFSRTLAGAGFVITSGLALGIDAAAHQAALDVGGQT 177
           +L KP +A+VG+R AS  G   A   +  L  +G V+ SG+A G+D+AAH  AL+ G  T
Sbjct: 112 LLGKPMVAIVGARNASANGQRLAERLAADLGRSGLVVVSGMARGVDSAAHVGALESG--T 169

Query: 178 VGVLGTGLENFYPQRNRRLADAMIASGSAVLSEFPLDAGPSPSNFPRRNRIISGLSLGVL 237
           + V+  G++  YP  N  L   +I  G AV+SE      P   +FPRRNRI+SGLSLGV+
Sbjct: 170 LAVVAGGVDVVYPPENDGLYRRLITEG-AVISETAPGEQPQARHFPRRNRIVSGLSLGVI 228

Query: 238 VVEASVASGSLITARLAAEQGREVYAIPGSIHHPGAKGCHQLIRDGAVLVETIEHILEAL 297
           VVE +  SGSLITARLAA+QGREV A+PGS     A+G + LI++GA L+E    +L  L
Sbjct: 229 VVEGAPRSGSLITARLAADQGREVMAVPGSPLDSRAQGPNGLIKNGAALIEDAADVLRIL 288

Query: 298 RGWQRLPLSTETP 310
                 P++ + P
Sbjct: 289 SPLIARPMAEDKP 301