Pairwise Alignments

Query, 273 a.a., Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) from Pseudomonas fluorescens FW300-N1B4

Subject, 287 a.a., shikimate 5-dehydrogenase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  269 bits (688), Expect = 4e-77
 Identities = 149/278 (53%), Positives = 187/278 (67%), Gaps = 9/278 (3%)

Query: 1   MDRYVVFGNPIGHSKSPLIHRLFAEQTGQKLDYSTLLAPLDDFSGCAQAFFREG-RGANV 59
           +DRY VFG+PIGHSKSP IH  FA  T + L Y  +LAP+D F    ++FF  G +GANV
Sbjct: 8   VDRYAVFGHPIGHSKSPFIHGQFAALTQESLTYEAILAPIDGFEASLKSFFSSGGKGANV 67

Query: 60  TVPFKEDAYRLANSLTKRAQRAGAVNTLSKLADGSLLGDNTDGAGLVRDLTVNAGFSLAG 119
           TVPFKE A+ L +SL+  A  AGAVNTLS LADGS+ GDNTDG GLV DL  + G SL  
Sbjct: 68  TVPFKEQAFALCDSLSAEAALAGAVNTLSLLADGSIRGDNTDGLGLVADLISHLG-SLQH 126

Query: 120 KRILLLGAGGAVRGALEPLLAEQPASVIIANRTVEKAELLAELFADL------GPVSASG 173
           KR+LL+GAGGA RG + PLL      ++I NRT  KA+ L ++F+ L        + A  
Sbjct: 127 KRVLLVGAGGAARGCILPLLNAGVGQLVITNRTQTKAKDLVDIFSQLEEGIYKDKLQALS 186

Query: 174 FDWLQEPVDLIINATSASLSGDVPPIASSLIEPGKTVCYDMMYGKDPTSFCRWASEHGAA 233
              L    +L+IN+TSASL+G++PP+  S+I    TVCYDMMYG  PT+F +WA + GAA
Sbjct: 187 MSELTGEFELVINSTSASLAGELPPLPQSIIG-STTVCYDMMYGAMPTAFNQWALQQGAA 245

Query: 234 VAMDGLGMLAEQAAEAFYLWRGVRPDTAPVLAELRRQL 271
             +DGLGML  QAA++F LWR V PDTA VL  LR +L
Sbjct: 246 KVIDGLGMLVGQAAKSFALWRTVEPDTAVVLKLLREKL 283