Pairwise Alignments

Query, 316 a.a., Transcriptional regulator, LysR family from Pseudomonas fluorescens FW300-N1B4

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  159 bits (401), Expect = 1e-43
 Identities = 102/288 (35%), Positives = 147/288 (51%), Gaps = 7/288 (2%)

Query: 10  LDLLRAFEAAARQRSFTAAAVELGTTQPAISQQIKRLEEQLATRLFDRIYRGIELTEAGT 69
           L+ ++AFEAAAR  SFT AA EL  TQ A+S QIK LE+ L  +LF R  R + LTE G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEGQ 67

Query: 70  ILFEQVQLGLQNIEAGLSAISAQQQHEVLQVATDFAFAAYWLMPRLHRFHTANPQVDVSL 129
             F  ++     +      + A+     L V+   +FA  WL+PRL +F   NP +DV +
Sbjct: 68  SYFLDIKDIFTQLSDATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKNPDIDVRI 127

Query: 130 VTSERSHNMLRTDIDVAVLFGDGRFKQGESHWLFSEEVFPVCSPLLLK-DRALPLPAQSL 188
              +     L  D+DVA+ +G G +    +  L +E + PVCSP+LL   + L  PA  L
Sbjct: 128 KAVDSEEGSLTDDVDVAIYYGQGSWPGLRADKLRNEVLIPVCSPMLLNGHKPLETPA-DL 186

Query: 189 LEFPLLHLRGEHSSNWFDWSGVFRELGITSAPAPGQLRFDNYTLLIQAAIGGQGVAIGWR 248
               LLH    H     DW   FR+ G+T         F + +L++QAA  GQGVA+G+ 
Sbjct: 187 KHHTLLHDMSRH-----DWQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHGQGVALGYS 241

Query: 249 HLVDNLLAQGLLCRPIADTVISRLGYYVVLPQRKRRRALIQLFVDWLM 296
            L    +  G L  P  + ++S+  YY+V  Q       I  F +W++
Sbjct: 242 VLARPDIKAGRLVVPFQEVLVSKDAYYLVCQQNHAELGKIVAFREWML 289