Pairwise Alignments

Query, 316 a.a., Transcriptional regulator, LysR family from Pseudomonas fluorescens FW300-N1B4

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  155 bits (391), Expect = 1e-42
 Identities = 105/301 (34%), Positives = 148/301 (49%), Gaps = 7/301 (2%)

Query: 10  LDLLRAFEAAARQRSFTAAAVELGTTQPAISQQIKRLEEQLATRLFDRIYRGIELTEAGT 69
           L+ ++AFEAAAR  SFT AA EL  TQ A+S QIK LEE L  +LF R  R + LTE G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLLLTEEGQ 67

Query: 70  ILFEQVQLGLQNIEAGLSAISAQQQHEVLQVATDFAFAAYWLMPRLHRFHTANPQVDVSL 129
             F  ++     +      + A+     L V+T  +FA  WL+PRL  F   NP +DV +
Sbjct: 68  GYFLDIKDIFVQLADATDRLLARSAIGSLTVSTSPSFAIQWLVPRLANFSENNPDIDVRI 127

Query: 130 VTSERSHNMLRTDIDVAVLFGDGRFKQGESHWLFSEEVFPVCSPLLLKDRALPLPAQSLL 189
              +   + L  D+DVA+ +G G +    +  L +E + PVCSP+LL           L 
Sbjct: 128 KAVDDETSSLTDDVDVAIYYGMGNWPGLRADKLRNEVLIPVCSPMLLSGPKPLSQPSDLK 187

Query: 190 EFPLLHLRGEHSSNWFDWSGVFRELGITSAPAPGQLRFDNYTLLIQAAIGGQGVAIGWRH 249
              LLH    H     DW   FR+ GI          F + +L++QAA  GQGVA+G+  
Sbjct: 188 HHTLLHDSSRH-----DWQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVALGYSV 242

Query: 250 LVDNLLAQGLLCRPIADTVISRLGYYVVLPQRKRRRALIQLFVDWL--MAEQACSAQSLN 307
           L    +  G L  P  + ++S+  YY+V  Q       I  F  W+  M E+   ++ L 
Sbjct: 243 LARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWMLDMFEEESRSELLP 302

Query: 308 G 308
           G
Sbjct: 303 G 303