Pairwise Alignments

Query, 316 a.a., Transcriptional regulator, LysR family from Pseudomonas fluorescens FW300-N1B4

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella sp. ANA-3

 Score =  153 bits (386), Expect = 6e-42
 Identities = 98/287 (34%), Positives = 144/287 (50%), Gaps = 5/287 (1%)

Query: 10  LDLLRAFEAAARQRSFTAAAVELGTTQPAISQQIKRLEEQLATRLFDRIYRGIELTEAGT 69
           L+ ++AFEAAAR  SFT AA EL  TQ A+S QIK LE+ L  +LF R  R + LTE G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEGQ 67

Query: 70  ILFEQVQLGLQNIEAGLSAISAQQQHEVLQVATDFAFAAYWLMPRLHRFHTANPQVDVSL 129
             F  ++     +      + A+     L V+   +FA  WL+PRL +F   NP +DV +
Sbjct: 68  SYFLDIKDIFTQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKNPDIDVRI 127

Query: 130 VTSERSHNMLRTDIDVAVLFGDGRFKQGESHWLFSEEVFPVCSPLLLKDRALPLPAQSLL 189
              +   + L  D+DVA+ +G G +    +  L +E + PVCSP+LL         + L 
Sbjct: 128 KAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGPKPLSKPEDLK 187

Query: 190 EFPLLHLRGEHSSNWFDWSGVFRELGITSAPAPGQLRFDNYTLLIQAAIGGQGVAIGWRH 249
              LLH    H     DW   FR+ GI          F + +L++QAA  GQGVA+G+  
Sbjct: 188 YHTLLHDMSRH-----DWQAWFRQCGIHDINVNQGPIFSHSSLVLQAAAHGQGVALGYSV 242

Query: 250 LVDNLLAQGLLCRPIADTVISRLGYYVVLPQRKRRRALIQLFVDWLM 296
           L    +  G L  P  + ++S+  YY+V  Q       +  F +W++
Sbjct: 243 LARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWML 289