Pairwise Alignments

Query, 448 a.a., alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas fluorescens FW300-N1B4

Subject, 454 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  305 bits (781), Expect = 2e-87
 Identities = 183/451 (40%), Positives = 260/451 (57%), Gaps = 17/451 (3%)

Query: 11  ILLVDDESAILRTFRYCLEDEGYSVATATSAAQAEALLQRQVFDLCFLDLRLGEDNGLDV 70
           ILLV+DE ++    ++ L   GY VA A +A  A   L R+ FDL   DLRL   +G+++
Sbjct: 6   ILLVEDELSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLPGMSGMEL 65

Query: 71  LAQMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLS 130
           L  +R   P   V+++TA   V+ AV AI+AGA D+L KP   D L +A  +      L 
Sbjct: 66  LDSIREMHPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFQSDGLLIAVERFFRFLDLK 125

Query: 131 ARLEALEGEVRKPKEGLDSHSPAMKVVLETARQVASTDANILILGESGTGKGELSRAIHG 190
              + L GE R+  E +   SPAM  V +  R +A     +L+LG SG+GK  ++ A+H 
Sbjct: 126 RENDRLRGE-REEGEFI-GESPAMLKVFDRIRALADACVPVLVLGPSGSGKELVAGALHR 183

Query: 191 WSKRQKKSCVTINCPSLTAELMDSELFGHSRGAFTGASESTLGRVNQADGGTLFLDEIGD 250
            SKR+ +  + INC +L  +L++SELFGH +GAFTGA ++ +G+   ADGGTLF DE+G+
Sbjct: 184 RSKRRDRPFIKINCAALPEQLLESELFGHEKGAFTGAQQARIGKFEAADGGTLFFDEVGE 243

Query: 251 FPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRFREDLLYRLNV 310
            PL LQ KLLR ++D+E   VG    R+ +VR + AT  NLE+ + DGRFREDL YR+NV
Sbjct: 244 MPLPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDLYYRINV 303

Query: 311 ITLHLPPLRERREDILNLADRFLARFVKEYSRPARCFSDEAREALLSYRWPGNIRELRNV 370
           + + LPPLRER  D+  L +RFL RF   + R A   S++AR ALL+Y +PGN+RELRN 
Sbjct: 304 VPVTLPPLRERGSDVALLTERFLRRFCALHERQA-TLSEQARLALLAYDYPGNVRELRNA 362

Query: 371 VERASIICPQERVELSHL------------GMAETPTNHTPRIGAALSLDELEKAHI-GA 417
           VE A ++C +  + + HL               +     TP    A  +   E+  I  A
Sbjct: 363 VEHAVLLCTEGEIHVGHLPERIRAATQSMPPACDDDAGDTP-ASLAEGVARFERRRIMEA 421

Query: 418 VLATADTLDQAAKTLGIDASTLYRKRKQYNL 448
           +  T     QAA  LGI    L+ K K+ ++
Sbjct: 422 LERTGGRKIQAADLLGISRKQLWLKLKELSI 452