Pairwise Alignments

Query, 448 a.a., alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas fluorescens FW300-N1B4

Subject, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  285 bits (730), Expect = 2e-81
 Identities = 177/472 (37%), Positives = 272/472 (57%), Gaps = 38/472 (8%)

Query: 10  RILLVDDESAILRTFRYCLEDEGYSVATATSAAQAEALLQRQVFDLCFLDLRLGEDNGLD 69
           +IL+VDD+  + ++F+  L  EG+ V  A+S  Q   +++ ++ +   +D+R+   NGLD
Sbjct: 3   KILIVDDDHQLRQSFQRLLAVEGHDVRGASSGEQGLRMVREELPECVIMDVRMPGMNGLD 62

Query: 70  VLAQMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCS-PDQLRLATAKQLEVRQ 128
            L  +R     + V+I+TA++  +TA++A + GA DY++KP   PD L L        R+
Sbjct: 63  ALKALREIDARLPVIIMTAYATTETAIEATKFGAFDYILKPFDIPDILALIDKAVEAGRR 122

Query: 129 LSARLEALEGEVRKPKEGLDSH-----SPAMKVVLETARQVASTDANILILGESGTGKGE 183
           +  R+        +P +G D+      S AM  V +   + A TDA +L+ GESGTGK  
Sbjct: 123 MRGRVAMTP----EPGDGGDAEALVGTSRAMHEVYKAIGRAAPTDALVLVRGESGTGKEL 178

Query: 184 LSRAIHGWSKRQKKSCVTINCPSLTAELMDSELFGHSRGAFTGASESTLGRVNQADGGTL 243
           ++RAI+  S R ++  + INC ++   L++SELFG+ +GAFTGA+   +G++ QA GGT+
Sbjct: 179 VARAIYQHSLRAERPYLVINCVAIPDTLLESELFGYEKGAFTGATHRRVGKIEQASGGTV 238

Query: 244 FLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRFRED 303
           FLDEIGD PL +Q KLLR +Q+++ ER+G   T   DVRI+AATN +LE  V DGRFRED
Sbjct: 239 FLDEIGDMPLGIQAKLLRLLQERQIERLGGRETIPVDVRIIAATNTDLEAAVADGRFRED 298

Query: 304 LLYRLNVITLHLPPLRERREDILNLADRFLARFVKEYSRPARCFSDEAREALLSYRWPGN 363
           L YRL V+TL LPPLRERREDI  LA  FL+RF +E   P    S EA   + ++ WPGN
Sbjct: 299 LYYRLKVVTLWLPPLRERREDIPPLARFFLSRFAREMDTPDPGISTEALAYMEAHPWPGN 358

Query: 364 IRELRNVVERASI------ICPQERVELSHLGMAETPTNHTPRIGAALSLDELEKA---- 413
           +REL N +++A +      + P++ +  +  G+  + +      GA   L +L +     
Sbjct: 359 VRELGNAIQKALVFNRGAPLLPED-IRQALEGVRGSTSTREGDEGAGDDLLQLVRRTLSG 417

Query: 414 -----------HIGAVLA------TADTLDQAAKTLGIDASTLYRKRKQYNL 448
                      H+G ++       T     +AA+ LG+   TL  + ++Y L
Sbjct: 418 GDDNAFETIMDHVGRIVVREALQYTGGNRTRAARLLGMSRPTLLARMERYGL 469