Pairwise Alignments

Query, 448 a.a., alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas fluorescens FW300-N1B4

Subject, 449 a.a., sigma-54 dependent DNA-binding response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  310 bits (795), Expect = 5e-89
 Identities = 187/447 (41%), Positives = 261/447 (58%), Gaps = 22/447 (4%)

Query: 11  ILLVDDESAILRTFRYCLEDEGYSVATATSAAQAEALLQRQVFDLCFLDLRLGEDNGLDV 70
           +L+VDD+ AI+RT    L+  G     A S + A   L+R   DL   D+R+ E  G+D+
Sbjct: 9   VLIVDDDEAIVRTLLIGLKGMGCRTRGAHSPSAALETLRRHPADLVLTDMRMEERTGVDL 68

Query: 71  LAQMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQ---LEVR 127
           + ++ +  P    VI+TA ++ + AV AI+AGA DY+ KP   DQL+    K    + +R
Sbjct: 69  IREVSMLYPHTVCVIMTAFASYENAVAAIKAGAFDYMPKPFGMDQLQHLVRKVSTLIGLR 128

Query: 128 QLSARLEALEGEVRKPKEGLDSHSPAMKVVLETARQVASTDANILILGESGTGKGELSRA 187
           + +ARL     +   P       SPA + +     ++A TDA +L  GE+GTGK EL+R 
Sbjct: 129 RENARLR----DEAAPDWFSGLTSPASRALEGLIDRIAPTDATMLFTGETGTGKTELART 184

Query: 188 IHGWSKRQKKSCVTINCPSLTAELMDSELFGHSRGAFTGASESTLGRVNQADGGTLFLDE 247
           +H  S R  +  V + C ++   L +SE+FGH+RGAFTGA +   G+  QA+GGTLFLDE
Sbjct: 185 LHRRSHRAARPFVEVTCTTIAETLFESEVFGHARGAFTGAVKDHAGKFEQANGGTLFLDE 244

Query: 248 IGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRFREDLLYR 307
           +GD    +Q KLLRF+ D+  ERVG       DVR++AATN +L  MV +G FREDL YR
Sbjct: 245 VGDLAPAMQSKLLRFLDDRVIERVGGSAGIELDVRVIAATNRDLTQMVAEGTFREDLYYR 304

Query: 308 LNVITLHLPPLRERREDILNLADRFLARFVKEY-SRPARCFSDEAREALLSYRWPGNIRE 366
           LN    H+PPLRERREDI  LA R L R +  Y S      ++E    L+S+ WPGN+RE
Sbjct: 305 LNTFECHIPPLRERREDIPPLATRLLHRALVRYPSEHPPVITEEVLHLLMSHDWPGNVRE 364

Query: 367 LRNVVERASIICPQERVELSHL--------GMAETPTNHTPRIGAALSLDELEKAHIGAV 418
           LRNV+ERA+++C    +  SHL        G   T  +  P      SL E+E+AHI  V
Sbjct: 365 LRNVMERATLLCAGGPITPSHLPPALVAGEGAVATVKDGIP------SLREVEEAHIRKV 418

Query: 419 LATADTLDQAAKTLGIDASTLYRKRKQ 445
           L    ++++AA  LGI   TL+RKRK+
Sbjct: 419 LGMGFSMERAADVLGITTVTLWRKRKE 445