Pairwise Alignments

Query, 448 a.a., alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas fluorescens FW300-N1B4

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  293 bits (750), Expect = 8e-84
 Identities = 176/458 (38%), Positives = 260/458 (56%), Gaps = 15/458 (3%)

Query: 3   SATEHQGRILLVDDESAILRTFRYCLEDEGYSVATATSAAQAEALLQRQVFDLCFLDLRL 62
           S T H   IL++DDE   L      L D GY+V        A A L+    D+   D+++
Sbjct: 2   SETTH---ILVIDDEKNYLLVLEALLTDAGYAVTALNDPETALAFLEESEVDVVITDMKM 58

Query: 63  GEDNGLDVLAQMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAK 122
               G +VL +++   P + V I+TA  +++ AVD ++ GA DY+ KP S D+L L+   
Sbjct: 59  PRVTGREVLERVKKTWPHIPVCIMTAFGSIEGAVDVMKYGAFDYITKPFSNDELLLSVQN 118

Query: 123 QLEVRQLSARLEALEG--EVRKPKEGLDSHSPAMKVVLETARQVASTDANILILGESGTG 180
             E+ ++  +  AL    E R     +   S A++ VL+   + A + + +LI GESGTG
Sbjct: 119 AAELSRVHRQYRALRANLEERYGTHQIIGRSKAIREVLDMVDRAAPSRSTVLITGESGTG 178

Query: 181 KGELSRAIHGWSKRQKKSCVTINCPSLTAELMDSELFGHSRGAFTGASESTLGRVNQADG 240
           K  ++RAIH  S R     V++NC +L   +++SELFGH +G+FTGA     GR  QADG
Sbjct: 179 KELVARAIHFSSPRNSGPFVSVNCMALNPGVLESELFGHEKGSFTGAMAMRRGRFEQADG 238

Query: 241 GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRF 300
           GTLFLDEIG+    LQ KLLR +Q++ +ERVG       D+R++AATN +L+  V +G F
Sbjct: 239 GTLFLDEIGELTPELQVKLLRVLQERRFERVGGGDEIEVDIRVVAATNKDLQKEVENGTF 298

Query: 301 REDLLYRLNVITLHLPPLRERREDILNLADRFLARFVKEYSRPARCFSDEAREALLSYRW 360
           REDL YRLNV+ + LPPLRERREDI  L   F+ +  ++     + F+ EA + L  Y W
Sbjct: 299 REDLYYRLNVVHVALPPLRERREDIPLLVGHFVEKLARDNGMKPKTFTPEAHDYLTGYEW 358

Query: 361 PGNIRELRNVVERASIICPQERVELSHL--------GMAETPTNHTP-RIGAALSLDELE 411
           PGNIR+L+NVVER  ++   + V +  L           ++  +  P R+  A +L+++E
Sbjct: 359 PGNIRQLQNVVERCLVLVASDTVGVDDLPPEIRDEESQLKSAVDLLPVRLDLADTLEKIE 418

Query: 412 KAHIGAVLATADTLD-QAAKTLGIDASTLYRKRKQYNL 448
            A I   L  A+ +  +AA+ LGI  S L  K K+Y +
Sbjct: 419 AALIRRALVRAEFVQVKAAELLGISKSLLQYKLKKYGI 456