Pairwise Alignments

Query, 448 a.a., alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas fluorescens FW300-N1B4

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  308 bits (789), Expect = 2e-88
 Identities = 181/464 (39%), Positives = 260/464 (56%), Gaps = 25/464 (5%)

Query: 10  RILLVDDESAILRTFRYCLEDEGYSVATATSAAQAEALLQRQVFDLCFLDLRLGEDNGLD 69
           RIL++DDE  I  + R  LEDEG+ V  A         L     D+ FLD+ +   +GL 
Sbjct: 4   RILIIDDEDDIRFSLRGILEDEGHEVTEAPDGEAGLRTLASDTPDVVFLDIWMPGMDGLT 63

Query: 70  VLAQMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQL 129
           VL  +   AP + V++++ H  ++TAV AI+ GA D++ KP S +++ +A  + LE+R+L
Sbjct: 64  VLEHIHAAAPSLPVIMISGHGTIETAVAAIKKGAHDFIEKPLSLEKVVIAAERALEMREL 123

Query: 130 SARLEALEGEVRKPKEG--LDSHSPAMKVVLETARQVASTDANILILGESGTGKGELSRA 187
               +AL   +    +   L   S  M+ + E   +VA TDA +LI GE+GTGK   +RA
Sbjct: 124 RRENQALRSSLGAGSKADELIGESAPMRRIREQIARVAPTDAWVLITGENGTGKELAARA 183

Query: 188 IHGWSKRQKKSCVTINCPSLTAELMDSELFGHSRGAFTGASESTLGRVNQADGGTLFLDE 247
           +H  S+R  +  V +NC ++  EL++SELFGH +GAFTGA  +  G+   A  GTLFLDE
Sbjct: 184 VHAGSQRATRPLVAVNCAAIPEELIESELFGHEKGAFTGAESARTGKFEMAHRGTLFLDE 243

Query: 248 IGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRFREDLLYR 307
           IGD  L  Q K+LR +Q++ +E+VG   T R DVR++AATN NLE+ +  G FREDL YR
Sbjct: 244 IGDMSLKTQAKILRILQEQSFEKVGGTRTIRVDVRVVAATNKNLEEQIAQGTFREDLYYR 303

Query: 308 LNVITLHLPPLRERREDILNLADRFLARFVKEYSRPARCFSDEAREALLSYRWPGNIREL 367
           L V  L LP LRER +DIL L D F+ R  ++++     F+D+A++ LL YRWPGN+REL
Sbjct: 304 LRVFPLSLPALRERGDDILRLLDAFMLRLCRDHAFAPLTFTDDAQDVLLRYRWPGNVREL 363

Query: 368 RNVVERASIICPQERVELSHL----------------GMAETPTNHTPRIGAALSLDELE 411
           RN VER  I+   E V++  L                G A      T   G    LD   
Sbjct: 364 RNFVERMLILHAGESVDVEDLPPECLRDLSPSSDSATGTAAQSATATCGTGVDGILDFKA 423

Query: 412 KAHIGAVLATADTLDQA-------AKTLGIDASTLYRKRKQYNL 448
             +       A+ L +        A+ +G++ S L+RK K Y +
Sbjct: 424 ARNAFETRFLAEQLQECGGNVSRLAERIGLERSHLHRKLKGYGI 467