Pairwise Alignments

Query, 342 a.a., Flagellar motor rotation protein MotB from Pseudomonas fluorescens FW300-N1B4

Subject, 314 a.a., flagellar motor protein MotB (RefSeq) from Shewanella loihica PV-4

 Score = 80.1 bits (196), Expect = 7e-20
 Identities = 78/296 (26%), Positives = 120/296 (40%), Gaps = 43/296 (14%)

Query: 24  WKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYFKDPVGFSESGTPYIIDLG----- 78
           W   FAD  + +M FF++L   S     +   IAG  K   G         I  G     
Sbjct: 17  WLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQNKVEVKDIPKGTSVIA 76

Query: 79  -----GSPTLAPENTLNPEVKSQPQPDKVTID----------------SEQVEGMAEQVE 117
                G P   P   +N +     +P   TI+                 EQ  G A    
Sbjct: 77  LEFRPGKPEPTPIEIINQQTNEMTEP---TIEVQAGEDDSAGGVQQQRGEQRGGEASSTA 133

Query: 118 KERLELLLQELQNKVEE------NPQLQKFKDQILFEITQDGLRIQ------IVDAENRP 165
           +E  +   Q  Q + E       N +++K   ++  EI    + I+      I+    + 
Sbjct: 134 QEEADSEAQAKQQQQEAASQDQINDRVKKMAQELNKEIVDGAIEIESLGQQIIIRIREKG 193

Query: 166 MFDSGSARLKPYFEDILLAMADTIKAVPNKISISGHTDAKPYSGTGDFGNWELSANRANA 225
            F SGS  L+P F+ ++  + + +K VP  I++SGHTD    S      NW+LS+ RA A
Sbjct: 194 AFSSGSGFLQPRFKPVIRRVGELLKDVPGIITVSGHTDDMNISNELYSSNWDLSSKRAVA 253

Query: 226 ARRALIAGSYPDAQVARVVGYASSA-LFDRENPFNPV-NRRIDIIVLTKKAQRAIE 279
               L+     D Q  +VVG AS+A L   ++  N   NRR++I +   K + + E
Sbjct: 254 VAHELVRVPGFDQQRMKVVGMASTAPLVPNDSAANRARNRRVEIAIEQGKPKESDE 309