Pairwise Alignments

Query, 342 a.a., Flagellar motor rotation protein MotB from Pseudomonas fluorescens FW300-N1B4

Subject, 275 a.a., chemotaxis motB protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 79.7 bits (195), Expect = 8e-20
 Identities = 72/260 (27%), Positives = 120/260 (46%), Gaps = 27/260 (10%)

Query: 24  WKIAFADFATAMMAFFLVLWLLSTATP-EQKIAIAGYFKDPVGFSESGTPYIIDL--GGS 80
           W I++ADF T + A F+VL+  + +   E K  + G            TP +  L  GG+
Sbjct: 15  WLISYADFMTLLFALFVVLYSFAMSDKNEAKFMVEGLIDSLSKIGLISTPAVNALAPGGT 74

Query: 81  PTLAPENTLNPEVKSQPQ--------PDKVTIDSEQVEGMAEQVEKERLELLLQELQNKV 132
             L P NT+   V ++P+        P     +++     +    ++  E++  +L+N++
Sbjct: 75  SILEP-NTVTSAVDAEPKLIETATTAPSTSESNNDLTNAKSNDTIRKYKEIISAKLKNEI 133

Query: 133 EENPQLQKFKDQILFEITQDGLRIQIVDAENRPMFDSGSARLKPYFEDILLAMADTIKAV 192
           E          ++  +   D L I+I D  N   F SGSA ++P F  ++  + + I +V
Sbjct: 134 ENQ--------EVEIDEVSDNLIIRIGD--NNTFFASGSAFIQPKFIPLIDKIGEVIASV 183

Query: 193 PNKISISGHTDAK-PYSGTGDFGNWELSANRANAARRALIAGSYPDAQVARVVGYA-SSA 250
           P ++ I+GHTDA  P     D  NW+LS+ RA A  R +      +     V G A +  
Sbjct: 184 PGRVVIAGHTDATLPMEIYAD--NWDLSSLRATAVVRIMTKNKGVNPSRIIVQGLADTQP 241

Query: 251 LFDRENP-FNPVNRRIDIIV 269
            F  + P     NRRI+II+
Sbjct: 242 RFQNDTPEHRQKNRRIEIIL 261