Pairwise Alignments

Query, 342 a.a., Flagellar motor rotation protein MotB from Pseudomonas fluorescens FW300-N1B4

Subject, 308 a.a., sodium-driven polar flagellar protein PomB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 78.2 bits (191), Expect = 3e-19
 Identities = 74/288 (25%), Positives = 122/288 (42%), Gaps = 32/288 (11%)

Query: 24  WKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYFKDPVGFSESGTPYIIDLG----- 78
           W   FAD  + +M FF++L   S     +   IAG  K   G         I  G     
Sbjct: 14  WLATFADLMSLLMCFFVLLLSFSEMDVMKYKQIAGSMKYAFGVQNKVEVKDIPKGTSVIA 73

Query: 79  -----GSPTLAPENTLNPEVKSQPQP--DKVTIDSEQVEGMAEQVEKER---LELLLQEL 128
                G P   P   +N +     +P  D    + +   G  +Q   +R        QE 
Sbjct: 74  LEFRPGRPDPTPIEIINQQTNEMTEPVLDLQAGEDDSSGGTQQQNGSQRGGEASATAQET 133

Query: 129 QNKVEE---------NPQLQKFKDQILFEITQDGLRIQ------IVDAENRPMFDSGSAR 173
           ++ V+          N Q++K   ++  EI    + I+      I+    +  F SGS  
Sbjct: 134 EDAVKAEAAAAQDKINQQVKKMAQELNQEIADGAIEIESLGQQIIIRIREKGSFASGSGF 193

Query: 174 LKPYFEDILLAMADTIKAVPNKISISGHTDAKPYSGTGDFGNWELSANRANAARRALIAG 233
           L+P F+ ++ ++ + +K VP  I++SG+TD    S      NW+LS+ RA A    L+  
Sbjct: 194 LQPRFKPVVRSVGELLKDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVADVLLQV 253

Query: 234 SYPDAQVARVVGYAS-SALFDRENPFNPV-NRRIDIIVLTKKAQRAIE 279
              D +  +VVG AS + +   ++P N   NRR++I +   KA+ + E
Sbjct: 254 KGFDPKRMKVVGMASNNPIVPNDSPDNRARNRRVEIAIEQGKAKESEE 301