Pairwise Alignments

Query, 342 a.a., Flagellar motor rotation protein MotB from Pseudomonas fluorescens FW300-N1B4

Subject, 243 a.a., chemotaxis MotB protein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 85.5 bits (210), Expect = 1e-21
 Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 26/233 (11%)

Query: 17  GGHHGGSWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYFKDPVGFSESGTPYIID 76
           GG  GGSWK+A+ADF TAMMAFFL++W+L+  + E K  +AGYF       +S       
Sbjct: 3   GGKGGGSWKVAYADFVTAMMAFFLLMWILNMTSKETKEGLAGYFSSDAAKMQSNNV---- 58

Query: 77  LGGSPTLAPENTLNPEVKSQPQPDKVTIDSEQVEGMAEQVEKERLELLLQELQNKVEENP 136
              SP        NP V+S  + D       +VE     + ++  ++L+       +  P
Sbjct: 59  ---SPV-----ANNPFVQSTDKLDTRDFKITEVERSHYAIAQKLRQMLM------ADATP 104

Query: 137 QLQKFKDQILFEITQDGLRIQIVDAENRPMFDSGSARLKPYFEDILLAMADTIKAVPNKI 196
           Q           I+ D + +Q+    +  M+  GSA L P    +L  +   +K     +
Sbjct: 105 QSAS-------GISADDVGVQL-RVNSDIMYAPGSAELAPEGAKVLDDVIRILKEYNLYL 156

Query: 197 SISGHTDAKPYSGTGDFGNWELSANRANAARRALIAGSYPDAQVARVVGYASS 249
            + GHTD+     +    NWELS  RA AA R +I          R + YA +
Sbjct: 157 VVRGHTDSGEPRNSIYPSNWELSGARAAAAVRYIITHGEIKPTRLRSIAYADT 209