Pairwise Alignments

Query, 262 a.a., Transcriptional regulator, AraC family from Pseudomonas fluorescens FW300-N1B4

Subject, 259 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  192 bits (487), Expect = 8e-54
 Identities = 96/249 (38%), Positives = 148/249 (59%), Gaps = 1/249 (0%)

Query: 9   LDFSELP-APVYFRYADFNTHEYASAHHHPWGTLEYSANGVLHMEIGSRRFMSPPQYAVW 67
           L   +LP A ++F Y  F  +     H H WG L+  + G++ +    +RF+SP QYA+W
Sbjct: 8   LSSDQLPVADIFFNYEAFLPNTITPKHRHNWGQLQLISGGIMELHASGQRFLSPSQYAIW 67

Query: 68  VPPGTEHSFYSNQPINYRAVCLAPALCRDLPQQACTLAISDILKAILKDFAARDVKIPEH 127
           VP G EH  Y+ + I+Y ++ +     +  P   C LA++ I +AI+ D   R V++ + 
Sbjct: 68  VPAGVEHESYTRRSIHYCSLNIVANRAQVFPDVTCLLAVTPIAQAIVNDLRQRQVRVAQT 127

Query: 128 DADKRLAQVLVDQLQQAPKHECYLPYASSPGLLGILEALQAEPGDNRPLAHWAAQIHVSE 187
           DADKRL +VL+DQL        +LP ++   L  IL+ L+ EP   + L  WA+++H +E
Sbjct: 128 DADKRLVEVLIDQLILGQAQPQFLPSSTDKLLQPILQQLELEPASQKSLKSWASELHTTE 187

Query: 188 RTLARQFVRELGMSFGEWRQRLRFLAAIEALDSQRSIQEIAFDMGYSTGSAFIAMFQRQA 247
           RTLAR+    LGMSF E RQR +F+ +++ L    SI+E+A  +GY+  S +I MF++ A
Sbjct: 188 RTLARRCQNCLGMSFTELRQRHKFIYSLQLLREGLSIKEVALTLGYNQTSPYIVMFKKYA 247

Query: 248 GCTPEQYRR 256
             +PEQYRR
Sbjct: 248 QYSPEQYRR 256