Pairwise Alignments

Query, 481 a.a., Mechanosensitive ion channel from Pseudomonas fluorescens FW300-N1B4

Subject, 275 a.a., hypothetical Small-conductance mechanosensitive channel (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 73.6 bits (179), Expect = 8e-18
 Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 2/177 (1%)

Query: 109 DLLGAVIFLIAVIAALAYVLELPVKGVLATSGALAIIVGLALQSTLSDVFSGIVLNTTKP 168
           +L  AV+F+  +IA L  +  +    ++A  GA  + VGLALQ +LS+  SG+++   +P
Sbjct: 62  NLSWAVVFVFTIIATLGQI-GVQTASLVAVIGAAGLAVGLALQGSLSNFASGVLMVLFRP 120

Query: 169 YQLDDWISIDGTEGRVTDIDWRATRLQTAQGSMAVIPNSLAAKAKIVNFSRPSDIFGVSI 228
            ++ D+I   G  G V +I   +T+L+T    + V PNS      I N+S  S+   + +
Sbjct: 121 CRVGDYIEAAGIAGTVDEITIFSTKLRTPDNKVIVAPNSSIMNGTITNYS-ASENRRIDL 179

Query: 229 SLQVSPHARPQTVIDALERAMQGCRFLLAKPAPSVSLKSSGSTGVEYEISGFVVSMD 285
            + VS  A        L   +   +++L +P  +V L    S+ + + +  +V + D
Sbjct: 180 VICVSYSADLAQTKKVLTEILDNNQYVLKEPGYTVGLSELASSSINFVVRPWVKTAD 236