Pairwise Alignments

Query, 1229 a.a., Exodeoxyribonuclease V beta chain (EC 3.1.11.5) from Pseudomonas fluorescens FW300-N1B4

Subject, 1223 a.a., exodeoxyribonuclease V, beta subunit (RefSeq) from Shewanella loihica PV-4

 Score =  637 bits (1644), Expect = 0.0
 Identities = 470/1255 (37%), Positives = 657/1255 (52%), Gaps = 87/1255 (6%)

Query: 1    MTTKTPLALAFPLCGSQLIEASAGTGKTFTISALYLRLVLGHGGESSGFGRELLPPQILV 60
            M T+T   L+ PL G++LIEASAGTGKT+TI+ LY+RL+LG    +      L   QILV
Sbjct: 1    MATQTLDPLSLPLSGTRLIEASAGTGKTYTIAGLYVRLLLGDSQRAP-----LSCEQILV 55

Query: 61   VTFTDAATKELRERIRTRLAEAARFFRDETSAPDGLIAELRDQYLPEQWSGCANRLDIAA 120
            VTFT+AAT+ELR+RIR ++  A R F       D LI  L  +  PE  S    RLD+A 
Sbjct: 56   VTFTNAATQELRDRIRKKIQLAYRAFLG-MEVDDPLINTLYSEAEPEARSQALKRLDLAL 114

Query: 121  QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMQGD 180
            + +DEAA+ TIH +CQR+L + AF+S  LF      D S+ L   +RD+WR  CYP+ G 
Sbjct: 115  KSLDEAAIFTIHGFCQRILSDMAFESSLLFESEFTLDDSEYLHHAVRDFWREACYPLPGY 174

Query: 181  ALNWVRGNWGGPAALLPRVRGLFASERDSVEGKEPA-ELIAECLQQRRAALLELKMPWRQ 239
                +   +  P  L  ++R L  + + SV     A   +AE L Q   +L  L++ W +
Sbjct: 175  LAQIISNKFSDPDGLTKQLRPLLGANQASVSPTPEAFSQVAERLSQ---SLSRLRLIWPR 231

Query: 240  WADELLAICHQGVASKSVDGRKMQ--PRYFEPWFEKLRAWAEDESLELLDIGTGFTRLTP 297
              D  L +      + +  G+K Q  P+  E  F  +  WA  + L L D       L  
Sbjct: 232  ERDATLELLKALPLNGTRFGKKDQGYPK-LETLFAAMDNWAA-QPLSLPD-NKVLGALAL 288

Query: 298  DGMSEAWKGEAPRHPGLDAMAGLKTSLDGLPTPDAAVLQHAAHWVGARFEEEKRRRAEMG 357
             G+     GE+P       +A ++   + + T   + L  A   + ARF  +K+ +    
Sbjct: 289  GGLKLNKGGESPTPEQAPLLAHIERVTETIDTLVPSFLYGARDGIKARFAAQKQLKNLRT 348

Query: 358  FDDMLLRLDAALQSEGGER--LATLIREQFPVALIDEFQDTDPVQYRIFESIYRIED--N 413
             DD+L+ L  AL  E  +   LA  I ++FP+ALIDEFQDTDP+QY+IF SIY+ +    
Sbjct: 349  PDDLLIALADALSEETDQEQALARAIAKRFPIALIDEFQDTDPLQYQIFSSIYQGQQVST 408

Query: 414  NPETGLFLIGDPKQAIYAFRGADIYTYLRARQATTGRLHTLGTNFRSSHGMVSAVNHVFE 473
            + + GL +IGDPKQAIYAFRGADI+TY+ AR  T    ++L TN+RSS  M+ AVN +F 
Sbjct: 409  DSDLGLLMIGDPKQAIYAFRGADIHTYIHARGQTENH-YSLDTNYRSSQAMIEAVNQLFS 467

Query: 474  RAESREQGRGAFLFREKNGENPVPFLPV----ESQGRKEVLQIDAQAVPALNIWHLSADQ 529
            R++        F+         +PF  V    E+  ++ V ++   +   L +     + 
Sbjct: 468  RSDD------PFI------SQAIPFELVKASPEAAEKRLVEKVPQTSALRLKLLGEDPNA 515

Query: 530  PLSGAVYRQQLAAACASEITALLNGGQQGCAGFIQDGKDFKGLLPSDIAILVRDGKEAQA 589
             L+ A  R QLA   A+EI  LLN  Q+G     +  K  K L   DIA+LVRD  EA  
Sbjct: 516  GLNKASARSQLAEDAANEIARLLNEAQRG-----ECLKQDKPLKAKDIAVLVRDRNEAAY 570

Query: 590  VRGELSARGVRSVYLSDKDSVFAAQEAHDLLTWLKACAEPDVERPLRAALACITLNLSLA 649
            ++  LS+RG+ +V+LS +DSVF    A +L   L A A P  ER LR+A+A   L     
Sbjct: 571  IKTALSSRGIGAVFLS-RDSVFDTLVAKELALVLLAIANPKDERALRSAMATALLGYDAQ 629

Query: 650  ELERLNQDELAWETRVMQFRGYRELWRKQGVLPMLRRLLHDFRLPQALIARNDGERVLTN 709
             +   N DE   + ++  F    + W K+G++P +  L  D RL + L+  ++G+R LT+
Sbjct: 630  AIHGFNLDEDVRQQQLEAFDNLHQTWLKRGIMPCMMALAADTRLIERLLTADEGQRRLTD 689

Query: 710  LLHLSELLQQAAAELDGEQALIRHLSEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKG 769
              HL ELLQQ A ELDG  AL+    + L +   + EE  LRLES++ LV++VTIHKSKG
Sbjct: 690  FRHLGELLQQKAMELDGISALLNWYQQTL-IEVSSTEEAQLRLESEQNLVQIVTIHKSKG 748

Query: 770  LEYPLVFLPFICSAKPVDGSRLPLYYHDATGKAQVSLKPTPELIAQADDERLAEDLRLLY 829
            LEYP+ FLPF+  A+       P+ YH+        +  + E  A+   E LAEDLRLLY
Sbjct: 749  LEYPICFLPFVSLARDSRRKPAPMLYHEQDALVW-DIDQSEEGWAKYKAENLAEDLRLLY 807

Query: 830  VALTRAQHACWLGVTDLKRGNNN---GSTLHLSALGYLLGGGAPLAESAGLRRWLEDLQQ 886
            VALTR   AC+  V +  R        S L  +A+GYLLG      E A ++   + L  
Sbjct: 808  VALTRPVLACYCYVANHSRFTKRDGISSQLFETAIGYLLGIETNACEFADIQAAAQALAS 867

Query: 887  DCPALNYGEMPEASAEHYHPPRNEATLLAPLIPKRKASENWWIASYSAL---RIGDSLSV 943
            +  +++  E      +       +A  LAP    R+    W + SYS L      + +S 
Sbjct: 868  EAISVDLVESDAPKLDFDPIDTADAVKLAPRPLNRRHEIPWRVGSYSGLVKHSAHEQISP 927

Query: 944  G-SDEAPESPQAQKLFDDERLDPQAPREVIAGGADIHRFPRGPNPGTFLHGLLEWAGDEG 1002
            G  DEA   P+ ++L  D     Q  R           F RG N G+FLH +LE      
Sbjct: 928  GMGDEA--FPELEQLAPDSE---QLSR---------FSFERGANAGSFLHWVLEQID--- 970

Query: 1003 FAAAPQTVEDAIARRCNRRGWEG-WITTLSDWLQHLLKSPLHIGGGQAPVVFGQLTQYRV 1061
            F  A  ++ D + +   R G +  W   L  W   LL +PL  G G       Q  Q  V
Sbjct: 971  FTLADTSLGDELPKAMERFGIDSEWQDMLHAWYLDLLHTPLD-GDGLRLASLSQ-AQKLV 1028

Query: 1062 EMEFWFASHKVDVLKLDELVRQYTHNGVARVAAEPVLLNGMFKGFIDLTFEHDGRYYVAD 1121
            EMEF+    K+D   L++L+ QY ++           L GM KGFIDLTFE+ G++Y+AD
Sbjct: 1029 EMEFYMPIGKLDAPGLNQLLSQYGYSAALNFET----LEGMLKGFIDLTFEYQGKFYIAD 1084

Query: 1122 YKSNWLGVDDAAYTVPAMEQSILDNRYDLQYVLYLLALHRQLKARLVDYDYERHVGGALY 1181
            YKSN LG   + Y  PAM ++I  + YDLQY++Y LALHR LK RL  Y Y++HVGG  Y
Sbjct: 1085 YKSNHLGDHLSHYEKPAMLRAIAGHHYDLQYIIYSLALHRYLKLRLPGYQYDQHVGGCYY 1144

Query: 1182 LFLRGTRA--ASQGVYFARPPRELIERLDRLF----------QGKPEPKAEPAWE 1224
            LFLRG  A   S GVY+ +PP  LI+ LD L           + K E +AEP  E
Sbjct: 1145 LFLRGMSADSPSTGVYYDKPPLALIQALDTLLSEAEASESQAESKAESQAEPQAE 1199