Pairwise Alignments

Query, 420 a.a., Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) from Pseudomonas fluorescens FW300-N1B4

Subject, 428 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  165 bits (417), Expect = 3e-45
 Identities = 128/436 (29%), Positives = 217/436 (49%), Gaps = 35/436 (8%)

Query: 5   VQITSATRQNLWRLTFIRTLVLAAQAGSVGLAYWFDLLPLPWVQLAMTLGCSMLLCAFTA 64
           V+I  A  Q   ++  +RTL L  Q G    A     L L    L       +L  + T 
Sbjct: 3   VKILGANLQAADQVALLRTLGLLLQIGLTLFAADTFGLSLQMEPLMHVFVLEVLYLSLT- 61

Query: 65  VRLRTSWPVTELEYAVQLACDLFIHSALLYFSGGSTNPFVSYYLVPLTIAAVTLPWRYSV 124
           + LR      E    + L+ D     + LYFSGG+TN F+S  L+P+ +AAVTLP     
Sbjct: 62  LALRKPLFAKERGLFIALSLDTLFWISWLYFSGGATNAFISLLLLPIALAAVTLPIWAPW 121

Query: 125 ILSGIALALYTLLLAQFYPLETFPIARENLQIYGM---------WLSFALAAAVITFFAA 175
            L+ I+   Y++++        F +    +Q +GM         W +F ++A V+T   A
Sbjct: 122 SLTAISTLAYSVMI--------FTVPESQMQHHGMDMSSHYLGMWFNFVISALVLTTSVA 173

Query: 176 RMAEELRRQEELRAIRREEGLRDQQLLAVATQAAGAAHELGTPLATMSVLLKEMRQDHPD 235
            +A+ +RRQ+   A  RE  LR +QL+A+ T +A  AH+L TPL+T+ +LL E+R++ P+
Sbjct: 174 LIAKRMRRQDAQLAYMREGQLRQEQLVALGTVSAQMAHQLATPLSTLHLLLDELREETPE 233

Query: 236 PLLQDDLSVLQDQVKLCKETLQQLVRAAEANRRLAVEMQDVTDWLDEALNRWHLMRPEAS 295
           P +   L  ++  +  C+ TL +L  A E+ R      Q++T+ +     +  L+ P+ +
Sbjct: 234 PSI--TLVEMETALGRCEHTLAELRLATESIRDRRQRPQNITELVVGLKQKTQLLMPQTA 291

Query: 296 YRFQRLGQGTV---PRMAPPPDLTQALLNLLNNAADACPEGL-----QVTLDWNAED--L 345
             +    +  +    ++     LT A++ L+ NAA A  E +      +++D +  +   
Sbjct: 292 LNWLITCEPKLLEEKQILTDMSLTPAIMALIENAARASVETIGTSQVDISVDCSPSEGQA 351

Query: 346 TISIRDHGAGVPLAIAEQIGKPFFTTKGKGFGLGLFLSKASVTRAGGSVKLYSHEEGGTL 405
            + IRD+GAG+  ++  Q+G        KG G+ L LS AS+ R G  + L +H +GGT+
Sbjct: 352 YLQIRDYGAGIAPSLLPQLG-TLLIESPKGLGVALLLSHASLERLGAELILANHPQGGTV 410

Query: 406 TELRL----PRVARGD 417
            ++R     P+V  G+
Sbjct: 411 AQIRFTLLAPKVPTGE 426