Pairwise Alignments

Query, 485 a.a., Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) from Pseudomonas fluorescens FW300-N1B4

Subject, 1088 a.a., ribonuclease E (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  288 bits (737), Expect = 7e-82
 Identities = 168/458 (36%), Positives = 259/458 (56%), Gaps = 13/458 (2%)

Query: 3   EEILINITPMES-RVAVVENGVLQEVHVERTQKRGIVGNIYKGKVVRVLPGMQAAFVDIG 61
           + +LIN T  E  RVA+V+   L ++ +E         NIYKGK+ RV P ++AAFVD G
Sbjct: 2   KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61

Query: 62  LDRAAFIHASEISLREGPTVES------ISALVHEGQSLVVQVTKDPIGSKGARLTTQLS 115
            +R  F+   EI+    P   S      I  +V EGQ ++VQ+ K+  G+KGA LTT +S
Sbjct: 62  AERHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFIS 121

Query: 116 IPSRYLVYMPRTAHVG-ISLKIEDEAERERLKQVVTDCVAKEGIKEAGGFILRTAAEGAG 174
           +   YLV MP     G IS +IE + ER  LK+ + D     G+    G I+RTA  G  
Sbjct: 122 LAGSYLVLMPNNPRAGGISRRIEGD-ERTELKEAMADLEVPAGM----GLIVRTAGVGKE 176

Query: 175 ADEILMDIRYLRRLWDQINEQIKTISAPSVIYEDLGLALRTLRDLVSPKIEKIRIDSRET 234
           + E+  D++ L+  W  I E  +T  AP +I+++  + +R +RD +   + +I ID    
Sbjct: 177 STELKWDLKVLQHHWAAITEAAQTKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRI 236

Query: 235 FQKTTQFVAELMPEIADRLEHYPGERPIFDLYGVEDEIQKALERKVPLKSGGYLVVDPAE 294
           +++  Q +A + P+  +R++ Y  E P+F  Y +E +I+ A +R+V L SGG +V+DP E
Sbjct: 237 YEEAKQHIALVRPDFVERVKLYEAEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTE 296

Query: 295 AMSTIDVNTGAFVGHRNLEETIFKTNLEAATAIARQLRLRNLGGIIIIDFIDMEDEEHQR 354
           A+++ID+N+       ++EET   TNLEAA  IARQLRLR+LGG+++IDFIDM    HQR
Sbjct: 297 ALTSIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQR 356

Query: 355 QVLRTLEKQLERDHAKTNIIGITELGLVQMTRKRTRESLEQVLCEPCSSCQGRGKLKTPE 414
           +V   L   +  D A+  +  I+  GL++M+R+R R SLE+     C  C G+G +++ E
Sbjct: 357 EVENRLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTE 416

Query: 415 TVCYEIFREILREARAYQAEGYRVLANQKVVDRLLDEE 452
           ++   I R +  EA          +    V   LL+E+
Sbjct: 417 SLALSILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEK 454