Pairwise Alignments

Query, 337 a.a., putative TIM-barrel protein, nifR3 family from Pseudomonas stutzeri RCH2

Subject, 334 a.a., Dihydrouridine synthase TIM-barrel protein nifR3 from Synechococcus elongatus PCC 7942

 Score =  198 bits (504), Expect = 1e-55
 Identities = 118/306 (38%), Positives = 171/306 (55%), Gaps = 8/306 (2%)

Query: 4   VRIGPYTLTNPLILAPMAGVTDQPFRQLCRRFGA-ALVVSEMLTSDMRLWNSRKSRLRMP 62
           +++G   L + ++ +P+AGV+D+ FRQL RR    +L+ +EM  + ++L      R R  
Sbjct: 19  LQVGSLILHSRVLQSPLAGVSDRSFRQLVRRSAPQSLIFAEMAHAGLQL----AGRDRWE 74

Query: 63  HADEPEPRSVQIAGGDPQMLADAARRNVELGAQIIDINMGCPAKKVCNKAAGSALMRDER 122
                +P   Q+ G  P  LA AA++    GA  ID+NMGCP  KV  K  GSAL+R+  
Sbjct: 75  FLPHEQPIGAQLFGDQPATLAAAAQQAEAAGAVCIDLNMGCPVSKVTRKRGGSALLREPE 134

Query: 123 LVGEILDAVVGAVDVPVTLKIRTGWDRQNKNGLTVARIAEQAGIAALAVHGRTRADLYTG 182
           L   I+ AV  AV +PVT+K R GW++     L  A+  E AG   L +HGR+R+  Y+G
Sbjct: 135 LAIAIVQAVAAAVSIPVTVKTRLGWEQVTI--LDFAQQLEAAGAQLLTLHGRSRSQGYSG 192

Query: 183 EAEYDTIAAIKQAVSIPVFANGDIDSPQKAAQVLRATGVDGLLIGRAAQGRPWIFREVEH 242
           +A+++ I  +K  +SIPV ANGDI+SP  A   L+ TG DG++ GR + G P +   ++ 
Sbjct: 193 QADWNWITRVKSRLSIPVIANGDINSPADAIACLQQTGADGVMCGRGSLGNPGLVGAIDR 252

Query: 243 YLRTGELLAAPTLEEIEDTLLEHVQALHEFYGEVMGVRIARKHVGWYLATLPGARDFRAR 302
            L+TGE      L +      EH+  L E  G   G+  ARKH+GWYLA  P  +D R  
Sbjct: 253 SLKTGEQTPELELRDRLQLAREHLLLLWEDKG-AAGLLQARKHLGWYLADQPDYQDLRQH 311

Query: 303 FNHLED 308
               ED
Sbjct: 312 LLRSED 317