Pairwise Alignments

Query, 337 a.a., putative TIM-barrel protein, nifR3 family from Pseudomonas stutzeri RCH2

Subject, 322 a.a., nifR3 family TIM-barrel protein (RefSeq) from Shewanella loihica PV-4

 Score =  380 bits (975), Expect = e-110
 Identities = 196/319 (61%), Positives = 237/319 (74%), Gaps = 1/319 (0%)

Query: 4   VRIGPYTLTNPLILAPMAGVTDQPFRQLCRRFGAALVVSEMLTSDMRLWNSRKSRLRMPH 63
           ++IGPY L N LI+APMAGVTDQPFR LC R+GAAL VSEML+S+  +W++ KSR RM H
Sbjct: 1   MQIGPYQLKNQLIVAPMAGVTDQPFRNLCLRYGAALAVSEMLSSNPEVWDTDKSRQRMAH 60

Query: 64  ADEPEPRSVQIAGGDPQMLADAARRNVELGAQIIDINMGCPAKKVCNKAAGSALMRDERL 123
           A E   RSVQIAG DP M+A AA  NV+ GAQIIDINMGCPAKKV  K AGSAL++   L
Sbjct: 61  AGEDGIRSVQIAGADPDMMAHAALVNVQQGAQIIDINMGCPAKKVNKKLAGSALLQQPEL 120

Query: 124 VGEILDAVVGAVDVPVTLKIRTGWDRQNKNGLTVARIAEQAGIAALAVHGRTRADLYTGE 183
           V  IL AVV AVDVPVTLKIRTGW  +++NG+ +A+IA+  GIA+LAVHGRTR  +Y G+
Sbjct: 121 VKAILQAVVAAVDVPVTLKIRTGWAPEHRNGVHIAQIAQDCGIASLAVHGRTRQCMYKGD 180

Query: 184 AEYDTIAAIKQAVSIPVFANGDIDSPQKAAQVLRATGVDGLLIGRAAQGRPWIFREVEHY 243
           AEYDTI AIKQ VSIPV ANGDI +P+KA  VL  TG D ++IGR AQGRPW+FRE++HY
Sbjct: 181 AEYDTIRAIKQNVSIPVVANGDICTPEKARSVLDYTGADAVMIGRGAQGRPWLFREIQHY 240

Query: 244 LRTGELLAAPTLEEIEDTLLEHVQALHEFYGEVMGVRIARKHVGWYLATLPGARDFRARF 303
           L TG  LA   ++E    +LEH++ L+  YGE  G+RIARKHVGWYL      R FRA F
Sbjct: 241 LETGNKLAPIEVDEKRQVMLEHLKNLYALYGEYKGLRIARKHVGWYL-DQEAQRSFRADF 299

Query: 304 NHLEDRDAQGFSIRQFFAE 322
           N LE  + Q   + ++F E
Sbjct: 300 NRLETVEEQRSMLERYFDE 318