Pairwise Alignments

Query, 948 a.a., Signal transduction histidine kinase from Pseudomonas stutzeri RCH2

Subject, 923 a.a., hybrid sensor histidine kinase/response regulator from Pseudomonas fluorescens SBW25-INTG

 Score =  956 bits (2472), Expect = 0.0
 Identities = 533/934 (57%), Positives = 665/934 (71%), Gaps = 30/934 (3%)

Query: 18  LRIAIAVIFGLLLINLIPLSAQAAIAQPSPSTVLVEADSVPQNWRILIDQSGGLTLDEVL 77
           LRIAI     LL + L  L AQAA AQ S              W +L+D+   L L ++ 
Sbjct: 4   LRIAIGFTVSLLTL-LCLLPAQAA-AQGS-------------GWAVLLDEQADLQLSDIR 48

Query: 78  SQRALFQ----RLDKLSYSAPASNRAVWLQVSLPSLTKPKWLWLFAPRVQYLDFYLLRDG 133
           S R   Q     LD+++ + P  + A+W++  L      + L +FAP + +L  Y+L   
Sbjct: 49  SSRYTNQFSPIELDRITAAEP--DGALWVRFKLQPGKHEQVLRVFAPDLSHLSLYVLDGD 106

Query: 134 QLEQHTATGELRPLSARPLPNRAYLFSLPNDGQPREAYIRLQSSHPVMTWFKTIDDSGLV 193
            L +  +TG  +P + RPLP+  ++  +P   +P E Y+RL S H +  +  T++ + L 
Sbjct: 107 TLVEQQSTGTRQPQAERPLPSSDFMLPMPQSQRPLEVYLRLVSEHELRPYI-TLEPAVLA 165

Query: 194 SQTKPAYL-FGALFGALALLMVYNLLRFAYTLSYTHIWLSLLHGALLVCAVANLGVLAVW 252
           +  +   L +G LFG L +L+++NL RFAY  S + +WL+     L++     L ++  W
Sbjct: 166 AADQTQTLIYGLLFGCLLMLILHNLTRFAYHRSRSSLWLAACEVLLMLSLALLLNLIGPW 225

Query: 253 LPGLTYSQPLIADLAALLASTALLGYTLGFFHHRGRTWITWLLGLEFNLILALAGSILL- 311
           LP     Q   A LA LL +   L +   FF   G   +  LL  +  L + L G +LL 
Sbjct: 226 LPNWHAVQTPGAYLALLLTAPCGLMFAYRFFMPLGPHPLNKLLMGDI-LFIVLCGLLLLF 284

Query: 312 -GQWPWYSWLIYSMGLVASFSVLFVALYHWRQGYQPARLVVAGLTLFNSGMVFFMPMLLG 370
               P  + + Y++  +A  S+LFV+ YHW++GY+PARL VA + +FN G +  +P LLG
Sbjct: 285 VNTLP-LNIITYALVALAGLSMLFVSAYHWQKGYRPARLFVAAMVVFNIGTLIILPALLG 343

Query: 371 FDQLDPGWLTGGLFSLATLGGLLLSFALLERQRQLQSDSRTQYTAEAVTSAELKTKADFL 430
              + P  L   L +   L GLL+S AL ERQR +     +     A ++AE+  KA+FL
Sbjct: 344 LTMVSPQGLIVTLLAFICLSGLLMSLALGERQRAIVEARFSLSRDLAASNAEIAAKAEFL 403

Query: 431 SKISHELRTPMNGVLGMSELLLGTSLSAKQRDYVQTIHSSGNELLNLINEILDISKLESG 490
           +KISHE+RTPMNGVLGM+ELLLGT LS KQRDYVQTIHS+GNELL LINEILDISKLESG
Sbjct: 404 AKISHEIRTPMNGVLGMTELLLGTPLSVKQRDYVQTIHSAGNELLTLINEILDISKLESG 463

Query: 491 QIELDDVQFDFNALIEDCLSIFRAKAEQQKVELISFIQPQLPQVVAGDPTRLRQTLLNLL 550
           QIELDDVQFD NALIEDCLSIFRAKAEQQ VELISFIQPQ+P+V++GDPTRLRQ +L+LL
Sbjct: 464 QIELDDVQFDLNALIEDCLSIFRAKAEQQNVELISFIQPQVPRVISGDPTRLRQAMLSLL 523

Query: 551 ENAFKQTDEGEVLLIAAVDGPQDNPRLRITVQDSGRPLEPYERDALLNAAVDSHDFLAST 610
           ENA ++TDEGEVL++ A+D     PRLRI VQDSG P+E  ERDALL++ + S +F ++T
Sbjct: 524 ENALQKTDEGEVLIVVALDDRSTKPRLRIAVQDSGLPMEAAERDALLHSELHSKNFFSAT 583

Query: 611 RHGGRLGLIIARQLVQLMDGDFGIQTGTTQGNTLWISLPLASEGLAQNNADLDGPLQGTR 670
           R  G LGL+IARQL+ LM+G+FGI++G+ QG+TLW++LPL  E L    +DLDGPL+G R
Sbjct: 584 RLNGHLGLVIARQLILLMNGEFGIKSGSHQGSTLWLTLPLDPERLEHPTSDLDGPLKGAR 643

Query: 671 LLIVDDNDTCRKVLVQQCSAWGLEVSAVASGKEALALLRTKAHLREYFDVVLLDQDMPGM 730
           +L+VDDNDTCRKVLVQQCSAWGL VSAV SGKEALALLRTKAHLR+YFDVVLLDQ+MPGM
Sbjct: 644 VLVVDDNDTCRKVLVQQCSAWGLNVSAVPSGKEALALLRTKAHLRDYFDVVLLDQNMPGM 703

Query: 731 TGMQLASKIKEDSSLNHDILLIMLTGMGSAPSKIIARNAGIKRILAKPVAGYTLKTTLAD 790
           TGMQLA+KIKED SLNHDILLIMLTG+ +APSKIIARN GIKRILAKPVAGYTLKTTLAD
Sbjct: 704 TGMQLAAKIKEDPSLNHDILLIMLTGISNAPSKIIARNCGIKRILAKPVAGYTLKTTLAD 763

Query: 791 ELAQRLQSS-QLRPALASPPLAPLEVPSDFRILVAEDNNISTKVIRGMLNKLNLQPDTAC 849
           EL QR + + Q RP LA P  A + VP+DFRILVAEDN+ISTKVIRGML KLNL PDTA 
Sbjct: 764 ELTQRSKGTLQSRPPLAVP--AAVTVPADFRILVAEDNSISTKVIRGMLGKLNLNPDTAS 821

Query: 850 NGEEALEAIKTQPYDLVLMDCEMPVLDGFQATQQLREWEARNGRSRTPVVALTAHILSEH 909
           NGEEALEA+K Q YDLVLMDCEMP+LDGF ATQQLR WE  + R RTPVVALTAHIL+EH
Sbjct: 822 NGEEALEAMKAQRYDLVLMDCEMPILDGFSATQQLRAWEVSHQRIRTPVVALTAHILTEH 881

Query: 910 RERAREAGMDGHMAKPVELSHLRELIDHWVRVKQ 943
           +ERAR+AGMDGHMAKPVELS LREL++ WV  +Q
Sbjct: 882 KERARQAGMDGHMAKPVELSQLRELVEFWVAQRQ 915



 Score = 51.6 bits (122), Expect = 2e-10
 Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 12/175 (6%)

Query: 637 GTTQGNTLWISLPLASEGLAQNNADLDGPLQGT-----RLLIVDDNDTCRKVLVQQCSAW 691
           G T   TL   L   S+G  Q+   L  P   T     R+L+ +DN    KV+       
Sbjct: 754 GYTLKTTLADELTQRSKGTLQSRPPLAVPAAVTVPADFRILVAEDNSISTKVIRGMLGKL 813

Query: 692 GLEVSAVASGKEALALLRTKAHLREYFDVVLLDQDMPGMTGMQLASKIK--EDSSLNHDI 749
            L     ++G+EAL  ++ +      +D+VL+D +MP + G     +++  E S      
Sbjct: 814 NLNPDTASNGEEALEAMKAQR-----YDLVLMDCEMPILDGFSATQQLRAWEVSHQRIRT 868

Query: 750 LLIMLTGMGSAPSKIIARNAGIKRILAKPVAGYTLKTTLADELAQRLQSSQLRPA 804
            ++ LT       K  AR AG+   +AKPV    L+  +   +AQR Q  +  P+
Sbjct: 869 PVVALTAHILTEHKERARQAGMDGHMAKPVELSQLRELVEFWVAQRQQRPEHAPS 923