Pairwise Alignments

Query, 948 a.a., Signal transduction histidine kinase from Pseudomonas stutzeri RCH2

Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  257 bits (657), Expect = 3e-72
 Identities = 171/522 (32%), Positives = 282/522 (54%), Gaps = 24/522 (4%)

Query: 426  KADFLSKISHELRTPMNGVLGMSELLLGTSLSAKQRDYVQTIHSSGNELLNLINEILDIS 485
            K++FL+ +SHE+RTPMN ++GM +L   T L+ +Q DY+     S   LL +IN+ILD S
Sbjct: 722  KSEFLANMSHEIRTPMNAIIGMLQLASRTQLTPQQADYLDKAGFSAQSLLRIINDILDFS 781

Query: 486  KLESGQIELDDVQFDFNALIEDCLSIFRAKAEQQKVELISFIQPQLPQVVAGDPTRLRQT 545
            K+E+G++EL+ V F  + +++  L +   KA+++ VEL+ +       ++ GDP RL Q 
Sbjct: 782  KIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQV 841

Query: 546  LLNLLENAFKQTDEGEVLLIAAVDGPQDNP-RLRITVQDSGRPLEPYERDALLNAAVDSH 604
            L+N+L NA K T  GE+ L     G +D+   L+  V+D+G  +   ++++L +A   + 
Sbjct: 842  LINMLSNAVKFTQSGEIELGCEDVGERDHRITLKFWVRDTGIGISKEQQESLFDAFAQA- 900

Query: 605  DFLASTRHGGR-LGLIIARQLVQLMDGDFGIQTGTTQGNT--LWISLPLASEGLAQNNAD 661
            D   + ++GG  LGL I++ LV +M G   +Q+    G+T    IS  +A E   +    
Sbjct: 901  DGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSELGVGSTFSFTISFEIAEEAEVK-PLI 959

Query: 662  LDGPLQGTRLLIVDDNDTCRKVLVQQCSAWGLEVSAVASGKEALALLRTKAHLREYFDVV 721
            +   +   + L+VDDN T  ++       +  +V   ++G EAL  L  +       D++
Sbjct: 960  VPEVIGNLKTLVVDDNPTALQIYSTAMRDFHFDVDTASNGAEALYKLEHRP-----VDLL 1014

Query: 722  LLDQDMPGMTGMQLASKIK---EDSSLNHDILLIMLTGMGSAPSKIIARNAGIKRILAKP 778
            LLD  MP M G+++   +     D  L    ++IM+T   S P K    +  I  +L KP
Sbjct: 1015 LLDWMMPEMDGVEVIKALDAMVADGRLEKRPVIIMMTAYASEPLKEDLDDLDIYAMLQKP 1074

Query: 779  VAGYTLKTTLADE-LAQRLQSSQLRPALASPPLAPLEVPSDFRILVAEDNNISTKVIRGM 837
                   + L DE +A  +   ++ PA A P           +IL+ EDN I+ +V   +
Sbjct: 1075 FKA----SALFDEIIAAFIDKPKINPAAALP--VEGNATGTGQILLVEDNFINQQVATEL 1128

Query: 838  LNKLNLQPDTACNGEEALEAIKTQPYDLVLMDCEMPVLDGFQATQQLREWEARNGRSRTP 897
            L     + D A NG+ AL+ +  + YD VLMD +MPV+DG  AT++LR+   R  +   P
Sbjct: 1129 LKSAGYEVDVAENGQVALDMVDAKQYDAVLMDIQMPVMDGLTATKELRK---RYTKEELP 1185

Query: 898  VVALTAHILSEHRERAREAGMDGHMAKPVELSHLRELIDHWV 939
            V+A+TAH +S  RE++  AGM+ H+ KP+ L+ L + +  W+
Sbjct: 1186 VIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFDTLAQWI 1227