Pairwise Alignments

Query, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas stutzeri RCH2

Subject, 317 a.a., tRNA pseudouridine(55) synthase TruB from Lysobacter sp. OAE881

 Score =  258 bits (660), Expect = 1e-73
 Identities = 143/304 (47%), Positives = 190/304 (62%), Gaps = 3/304 (0%)

Query: 1   MAQVKRVRRNVNGIILLDKPRGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFG 60
           M + K   R ++GI+LLDKP+G +SN ALQ+ R L  AEK GHTGSLDPLATG+LPLCFG
Sbjct: 1   MTKAKTRFRPLDGILLLDKPQGLSSNQALQQARHLFRAEKGGHTGSLDPLATGLLPLCFG 60

Query: 61  EATKFSQYLLDADKAYETVMQLGVTTTTADAEGEVLERKPV-AVTVEQLEALLPQFRGDI 119
           EATK +  LL + KAYET   LG+TT + DA+G  L  +PV A+    +EA L   RG I
Sbjct: 61  EATKIAGLLLGSAKAYETTAVLGLTTDSDDADGAPLLERPVPALDDAAIEAALAPLRGPI 120

Query: 120 LQVPPMYSALKRDGQPLYKLARAGEVVEREPRSVNIARLELLSLEGDKARLAVSCSKGTY 179
            Q  P+YSALK+ G+PLY  AR GE +E   R V + R EL+  +G + RL V C  GTY
Sbjct: 121 RQRAPIYSALKQGGEPLYAKARRGEAIEAPERDVVVHRFELIERDGPRLRLHVECGSGTY 180

Query: 180 IRTLVEDLGHLLGCGAHVAELRRTQAGPFDLSQTVTLETLEQLHSEGGAEALDALLQPVD 239
           +R+LV DLG  LGCGAHVA LRR    PF   + +TL+ L  +    G  A++ LL P++
Sbjct: 181 VRSLVRDLGEALGCGAHVATLRRLWVDPFHAPRMITLDALRAMRESDGEAAIEDLLLPIE 240

Query: 240 SGLEHWPLLQLSEHSAYYWLHGQPVRAPEAPKYGMVRVQDNNGRFIGIGEVSEDGRIAPR 299
           +GL  +P + +   +A     GQ V   +A   G+V +    GR +G+G+     R+AP+
Sbjct: 241 AGLSQFPRVDVDASAARRLGQGQGVDCAQAAD-GLVAIFGPEGRCLGLGQ-RTGTRLAPQ 298

Query: 300 RLIR 303
           RL R
Sbjct: 299 RLFR 302