Pairwise Alignments

Query, 493 a.a., transcription termination factor NusA/transcription termination factor NusA, C-terminal duplication from Pseudomonas stutzeri RCH2

Subject, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

 Score =  612 bits (1577), Expect = e-179
 Identities = 310/493 (62%), Positives = 396/493 (80%), Gaps = 3/493 (0%)

Query: 1   MSKEVLLVVESVSNEKGVPASVIFEALELALATATKKRYEDEVDLRVEINRQNGSYETFR 60
           MSKE+L VVE+VSNEK VP   IFEALE ALAT+TKK+YE E+D+RV I+R+ G++ETFR
Sbjct: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60

Query: 61  RWTVVDDEHFDDPAHQLALDQAQERNPDAKLGDVFEEKIESIEFGRIAAQTAKQVIVQKV 120
           RW VV  E+ + P  +++ + A   +   +LGD  E++IES+ F RI  QTAKQVIVQKV
Sbjct: 61  RWLVV--ENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKV 118

Query: 121 REAERAQVVEAYRDRLGEIISGTVKKVTRDSVIVDLGNNAEALLAREDIIARETFRVGAR 180
           REAERAQ+VE + D  GE+++G VKKV R++VI+DLGNNAEA++ RED + RE FR G R
Sbjct: 119 REAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDR 178

Query: 181 VRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMGASRDPGSRAKIAV 240
           VR LL ++  E RG QL ++R+ P+ML ELFR+EVPEI E LIE+  A+RDPGSRAKIAV
Sbjct: 179 VRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAV 238

Query: 241 RSKDKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDENPAQLVINAMAPAEVAAIIV 300
           ++ DKRIDP GAC+GMRG+RVQAVSGE+GGER+DIVLWD+NPAQ VINAMAPA+VA+II+
Sbjct: 239 KTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIM 298

Query: 301 DEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQEETGDILRN 360
           DEDAH+MDIAV  DNLAQAIGR GQNVRLASQLTGW LNVMT AD+Q K QEE+   + N
Sbjct: 299 DEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIEN 358

Query: 361 FIDELDVDEELAQVLVEEGFTSLEEIAYVPMEEMLGIEGFDEDIVNELRTRAKDRLLTKA 420
           F+  LD++++ A++LVEEGF++LEEIAYVPM E+L ++G DED+ +ELR+RAK+ L T A
Sbjct: 359 FMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIA 418

Query: 421 IANEEKLADAQPAEDLLALDGMDKELAVELAVRGVITREDLAEQSIDDLLDIDGIDEERA 480
           +A EE     +PAEDLLAL G+++++A +LA +GV T EDLA+Q +DDL  I+G+ E+RA
Sbjct: 419 LAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRA 478

Query: 481 GKLIMAAR-AHWF 492
           G+LIMAAR   WF
Sbjct: 479 GELIMAARNICWF 491