Pairwise Alignments

Query, 493 a.a., transcription termination factor NusA/transcription termination factor NusA, C-terminal duplication from Pseudomonas stutzeri RCH2

Subject, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella loihica PV-4

 Score =  630 bits (1626), Expect = 0.0
 Identities = 320/495 (64%), Positives = 406/495 (82%), Gaps = 3/495 (0%)

Query: 1   MSKEVLLVVESVSNEKGVPASVIFEALELALATATKKRYEDEVDLRVEINRQNGSYETFR 60
           M+KE+LLV E+VSNEK VP   IFEALE+ALATATKK+YE ++++RV I+R+ G YETFR
Sbjct: 1   MNKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGEYETFR 60

Query: 61  RWTVVDDEH--FDDPAHQLALDQAQERNPDAKLGDVFEEKIESIEFGRIAAQTAKQVIVQ 118
           RW VV+DE    ++P  ++ L+ A+  NP+ ++G+  E++IES+ F RI  QTAKQVIVQ
Sbjct: 61  RWMVVEDEGQALENPFREITLEAARYENPEIQVGEYIEDEIESVVFDRITTQTAKQVIVQ 120

Query: 119 KVREAERAQVVEAYRDRLGEIISGTVKKVTRDSVIVDLGNNAEALLAREDIIARETFRVG 178
           KVREAERAQ+V+ + ++ GE+I+G VKK  R+SV+VDLGNNA+A+L +ED+I+RE+FR G
Sbjct: 121 KVREAERAQIVDQFLEKEGELITGVVKKSNRESVVVDLGNNADAVLFKEDLISRESFRPG 180

Query: 179 ARVRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMGASRDPGSRAKI 238
            RVRALL  +R E RG QL L+RT P MLIELFR+EVPEIA+ +IE+MGA+RDPGSRAKI
Sbjct: 181 DRVRALLYAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKI 240

Query: 239 AVRSKDKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDENPAQLVINAMAPAEVAAI 298
           AV+S D+RIDP GAC+GMRG+RVQAVS E+GGERVDIVLWD+NPAQ VINAMAPA+VA+I
Sbjct: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASI 300

Query: 299 IVDEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQEETGDIL 358
           IVDED H+MDIAV  D+LAQAIGR GQNVRLA+QL+GW LNVMT  D+QAK Q E+  I+
Sbjct: 301 IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVEDMQAKHQAESAKIV 360

Query: 359 RNFIDELDVDEELAQVLVEEGFTSLEEIAYVPMEEMLGIEGFDEDIVNELRTRAKDRLLT 418
             F+  LDVDE+ AQVL +EGFTSLEE+AYVP  E+L I+GFDE+IV  LR RAK  + T
Sbjct: 361 NLFVSALDVDEDFAQVLADEGFTSLEEVAYVPESELLEIDGFDEEIVEALRERAKAAIST 420

Query: 419 KAIANEEKLADAQPAEDLLALDGMDKELAVELAVRGVITREDLAEQSIDDLLDIDGIDEE 478
           +A+A+EE L  A+P+EDLLAL+G+++ LA  LA +GVIT EDLAEQ IDDL++I+ + EE
Sbjct: 421 RALASEEALDGAEPSEDLLALEGLERHLAYVLASKGVITLEDLAEQGIDDLIEIEELTEE 480

Query: 479 RAGKLIMAAR-AHWF 492
           +AG+LIMAAR   WF
Sbjct: 481 KAGELIMAARNICWF 495