Pairwise Alignments

Query, 493 a.a., transcription termination factor NusA/transcription termination factor NusA, C-terminal duplication from Pseudomonas stutzeri RCH2

Subject, 443 a.a., transcription elongation factor NusA (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  301 bits (770), Expect = 4e-86
 Identities = 167/443 (37%), Positives = 273/443 (61%), Gaps = 13/443 (2%)

Query: 1   MSKEVLLVVESVSNEKGVPASVIFEALELALATATKKRYEDEVDLRVEINRQNGSYETFR 60
           MS E+   ++ +S +KG+   ++ + LE A+ T+  +++ DE+D  V  N + G  + ++
Sbjct: 1   MSLELKKAIDQISKDKGLDRDMLIDTLEEAVRTSVARKFGDEMDAEVSYNDETGEIDVYQ 60

Query: 61  RWTVVDDEHFDDPAHQLALDQAQERNPDAKLGDVFEEKIESIEFGRIAAQTAKQVIVQKV 120
              VV  +  ++P  +++L+ A+  +P  +L D    +++  + GRIAAQ+AKQVI+Q++
Sbjct: 61  FKIVV--KKVENPNSEISLEDARTHDPSVQLDDEMGFRVKIEDLGRIAAQSAKQVIIQRM 118

Query: 121 REAERAQVVEAYRDRLGEIISGTVKKVTRDSVIVDLGNNAEALLAREDIIARETFRVGAR 180
           R+AE+  + E Y+DR GEI+SG +++  +   I++LG   EALL +E+ I RE ++ G R
Sbjct: 119 RDAEQEIIYEEYKDRRGEIVSGIIQRRDKAGWIINLGRT-EALLPKEEQIPREHYKRGDR 177

Query: 181 VRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMGASRDPGSRAKIAV 240
           V+A+L ++R E RGPQ+I+SR     +  LFR EVPE+ +G +++MG SRDPGSRAK AV
Sbjct: 178 VQAILIDVRKEGRGPQVIVSRAHRDYMAALFRREVPEVDDGTVQIMGVSRDPGSRAKAAV 237

Query: 241 RSKDKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDENPAQLVINAMAPAEVAAIIV 300
            S+D+ +DP GAC+G+RGSR+Q +  E+ GER+DIV+W  + A    NA++PA ++ I+V
Sbjct: 238 MSRDRDVDPVGACVGIRGSRIQNIVQEMRGERIDIVVWSPDIATYARNALSPAVISRIVV 297

Query: 301 DEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQEETGDILRN 360
           DE+ + +++ V +D L  AIGR GQNV+LA++L GW +++ TE      +  E   I R 
Sbjct: 298 DEEENLLEVIVPDDQLTNAIGRKGQNVKLAAKLLGWKIDIYTET-----RYNEANAIGRG 352

Query: 361 FIDELDVDEELAQVLVEEGFTSLEEIAYVPMEEMLGIEGFDEDIVNELRTRAKDRLLTKA 420
                 V E   +  +  GF S+E +     EE+    G     + +LR  A + L  +A
Sbjct: 353 LEQIASVAEISIEQFIAAGFQSIERLREADDEELASALGLAPGKIADLRA-AINFLAPQA 411

Query: 421 IANEEKLA--DAQPAEDLLALDG 441
             + +  A  DA+PA +  A DG
Sbjct: 412 QDDADATAEPDAEPAPE--AADG 432